Linker histones are nonessential for the life of single-celled eukaryotes. Linker histones, however, can be important components of specific developmental programs in multicellular animals and plants. For Caenorhabditis elegans a single linker histone variant (H1.1) is essential in a chromatin silencing process which is crucial for the proliferation and differentiation of the hermaphrodite germ line. In this study we analyzed the whole linker histone complement of C. elegans by telomeric position effect variegation in budding yeast. In this assay an indicator gene (URA3) placed close to the repressive telomeric chromatin structure is subject to epigenetically inherited gene inactivation. Just one out of seven C. elegans linker histones (H1.1) was able to enhance the telomeric position effect in budding yeast. Since these results reflect the biological function of H1.1 in C. elegans, we suggest that chromatin silencing in C. elegans is governed by molecular mechanisms related to the telomere-dependent silencing in budding yeast. We confirmed this hypothesis by testing C. elegans homologs of three yeast genes which are established modifiers of the yeast telomeric chromatin structure (SIR2, SET1, and RAD17) for their influence on repeat-dependent transgene silencing for C. elegans.Linker histones are highly abundant eukaryotic chromatin proteins. They bind to the nucleosomes, forming the 30-nm chromatin fiber. The biological function of linker histones is not sufficiently clear. In contrast to the core histones which are essential for eukaryotic life (17, 25), linker histones are dispensable in single-celled organisms, as shown by knockouts performed with Tetrahymena (40), yeast (13,35), and in simple multicellular fungi such as Aspergillus (36) and Ascobolus (8). For multicellular eukaryotes, linker histones usually exist as a set of relatively divergent protein variants. The occurrence of a typical linker histone gene family is correlated with multicellularity in plants as well as in animals. For a long time it has been considered that different linker histone variants could fulfill different biochemical functions, but no canonical test has been established to investigate this. Only recently it has become apparent that individual linker histone variants can specifically contribute to essential aspects of multicellular life, like cell differentiation and development (for a review, see reference 23). We use Caenorhabditis elegans as a model system to investigate this question. C. elegans possesses eight different linker histone variants, the same number as for humans (3, 4, 47) or mice (12), and it allows dissection of the functions of individual linker histone genes with RNA interference (RNIi) and cytological techniques. In previous work we characterized the function of the major histone H1 variant in C. elegans, H1.1 (19). This protein is essential for the germ line-specific chromatin silencing and consequently also for hermaphrodite fertility. The phenotype of H1.1 depletion is very similar to the phenotype of ...