Low genetic diversity of a natural population of Garlic virus D from Poland

Bereda, Maria; Kalinowska, E.; Paduch-Cichal, E.; Szyndel, Marek S.

doi:10.1007/s10658-015-0615-x

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Cited by 6 publications

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“…All compared isolates showed 85-100% nt and 95-100% aa identity. The same value of identity was obtained for a smaller number of isolates of the research conducted in 2014 (Bereda et al 2015). High identity was confirmed by a phylogenetic analysis (Fig.…”

Section: Origin Of Plantsupporting

confidence: 79%

Occurrence and phylogenetic analysis of allexiviruses identified on garlic from China, Spain and Poland commercially available on the polish retail market

2017

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Section: Origin Of Plantsupporting

confidence: 79%

Occurrence and phylogenetic analysis of allexiviruses identified on garlic from China, Spain and Poland commercially available on the polish retail market

2017

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“…In due course of time, they might have spread to different geographical regions by different means such as transport of biological material of plant origin, etc. (Bereda et al, 2015(Bereda et al, , 2017. GarV-D in garlic plants was earlier reported in Pacific Northwest (Gieck et al, 2009), Democratic Republic of Congo (Majumder et al, 2018), Poland (Chodorska et al, 2013;Bereda et al, 2015) and Australia (wylie et al, 2014).…”

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confidence: 78%

Complete genome sequence and genetic organization of a Garlic virus D infecting garlic (Allium sativum) from northern India

Singh¹,

Truong²,

An³

et al. 2020

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The present paper describes first full genome sequence of the Garlic virus D (GarV-D) from northern India with a genome size of 8425 bp long ssRNA. The infected leaves and bulbs of garlic variety Yamuna Safed (G-282) plants suspected for GarV-D infection were collected with the aim to identify contagion virus during March, 2018. The total RNA was extracted from the pooled garlic plants using TRIzol reagent and sequenced using an Illumina HiSeq 2000 platform. BLASTn search in the NCBI database identified contagion as GarV-D (MK518067). It shared 83.63-85.83% nucleotide sequence identities with other (GarV-D) isolates from Argentina (KF550407, KF555653, KR819505) and 83.15% with isolates from China (MF795136, MF363012).

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