Twelve human THAP proteins share the THAP domain, an evolutionary conserved zinc-finger DNA-binding domain. Studies of different THAP proteins have indicated roles in gene transcription, cell proliferation and development. We have analyzed this protein family, focusing on THAP7 and THAP11. We show that human THAP proteins possess differing homo-and heterodimer formation properties and interaction abilities with the transcriptional co-regulator HCF-1. HEK-293 cells lacking THAP7 were viable but proliferated more slowly. In contrast, HEK-293 cells were very sensitive to THAP11 alteration. Nevertheless, HEK-293 cells bearing a THAP11 mutation identified in a patient suffering from cobalamin disorder (THAP11 F80L ) were viable although proliferated more slowly. Cobalamin disorder is an inborn vitamin deficiency characterized by neurodevelopmental abnormalities, most often owing to biallelic mutations in the MMACHC gene, whose gene product MMACHC is a key enzyme in the cobalamin (vitamin B 12 ) metabolic pathway. We show that THAP11 F80L selectively affected promoter binding by THAP11, having more deleterious effects on a subset of THAP11 targets, and resulting in altered patterns of gene expression. In particular, THAP11 F80L exhibited a strong effect on association with the MMACHC promoter and led to a decrease in MMACHC gene transcription, suggesting that the THAP11 F80L mutation is directly responsible for the observed cobalamin disorder.
OPEN ACCESSCitation: Dehaene H, Praz V, Lhôte P, Lopes M, Herr W (2020) THAP11 F80L cobalamin disorderassociated mutation reveals normal and pathogenic THAP11 functions in gene expression and cell proliferation. PLoS ONE 15(1): e0224646. default.aspx) and the University of Lausanne to D / E HxY HCF-1-Binding Motif (HBM; [34,35]) sequence for HCF-1 interaction (Fig 1, orange and dashed-orange lines) and a coiled-coil domain involved in protein homo-and heterodimer formation [36]. It has been argued that all [4] or all but one (THAP10) [37] of the 12 THAP proteins contain a coiled-coil domain. Nevertheless, in our analysis with two independent prediction tools (COILS [38] and PairCoil2 [39]), we detected a coiled-coil domain in only nine of the 12 THAP proteins; we did not detect a coiled-coil domain in THAP0, 9 and 10 (Fig 1, blue boxes). These two motifs, HBM and coiled-coil, appear together in seven of the THAP-protein functions in health and disease PLOS ONE | https://doi.org/10.1371/journal.pone.0224646 January 6, 2020 2 / 26 WH. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.* Fig 2. THAP7 and THAP11 homodimer but not heterodimer formation. HEK-293 cells were co-transfected with or without Flag-and HA-tagged THAP constructs (as indicated), and whole-cell lysates subjected to HA immunoprecipitation and analyzed by immunoblot with anti-HA (upper panels) and anti-Flag (lower panels) antibodies. (A) THAP7 homodimer formation. (B) THAP11 homodimer formation. HBM-positive THAP proteins are labeled in gre...