“…In acute infection of rhesus macaques with simian immunodeficiency virus (SIV), within days of infection, a similarly dramatic depletion of gastrointestinal (GI) tract CD4 T cells was observed (61). Phenotypic assessments of which gut CD4 T cells are lost during HIV-1/SIV infection of individuals (5,21,33,39,45,50,51,54) confirmed the preferential depletion of CD4 T cells and indicated that the majority of such cells express CCR5 and are therefore permissive to infection (30,46). The suggestion that the majority of these cells, which are later depleted, are infected was confirmed by ISH for HIV-1 and SIV during the acute phase of disease (22,32,39,53) as well as by flow cytometric sorting of defined T cell subsets followed by quantitative PCR assays for viral DNA (4, 16).…”