“…Sh2d1a , Cask , Mr1 , and Stx6 showed the highest upregulation in the tumors where they were found as integrations, indicating an activating effect of the integrated retrovirus on these genes. The expression of Notch1 , Myc , Rasgrp1 , Rras2 and the D-type cyclines, which are major common integration target in many MLV induced lymphomas [20,22,28,30], remained unchanged in both overall gene expression and in the individual tumors where they were found as integrations. Although our results indicate that the presence of a virus in the vicinity of a gene does not always alter its expression, we cannot exclude whether or not there is an oncogenic effect of the integrations on protein stability or alternative splicing, as we only analyzed the summarized gene expression.…”