“…Standard variant calling pipelines have been available for about one decade, and they have undergone continuous improvement during this time. Such pipelines have enabled us and other teams to detect countless deleterious mutations [27] , [28] , [29] , [30] , [31] . A number of studies have compared pipelines according to sequencing technologies, alignment software, post-alignment processing, and variant calling software [32] , [33] , [34] .…”