Loss of function of ribosomal protein L13a blocks blastocyst formation and reveals a potential nuclear role in gene expression

Abstract

Ribosomal proteins play diverse roles in development and disease. Most ribosomal proteins have canonical roles in protein synthesis, while some exhibit extra‐ribosomal functions. Previous studies in our laboratory revealed that ribosomal protein L13a (RPL13a) is involved in the translational silencing of a cohort of inflammatory proteins in myeloid cells. This prompted us to investigate the role of RPL13a in embryonic development. Here we report that RPL13a is required for early development in mice. Crosses between Rpl13a+/− mice resulted in no Rpl13a−/− offspring. Closer examination revealed that Rpl13a−/− embryos were arrested at the morula stage during preimplantation development. RNA sequencing analysis of Rpl13a−/− morulae revealed widespread alterations in gene expression, including but not limited to several genes encoding proteins involved in the inflammatory response, embryogenesis, oocyte maturation, stemness, and pluripotency. Ex vivo analysis revealed that RPL13a was localized to the cytoplasm and nucleus between the two‐cell and morula stages. RNAi‐mediated depletion of RPL13a phenocopied Rpl13a−/− embryos and knockdown embryos exhibited increased expression of IL‐7 and IL‐17 and decreased expression of the lineage specifier genes Sox2, Pou5f1, and Cdx2. Lastly, a protein–protein interaction assay revealed that RPL13a is associated with chromatin, suggesting an extra ribosomal function in transcription. In summary, our data demonstrate that RPL13a is essential for the completion of preimplantation embryo development. The mechanistic basis of the absence of RPL13a‐mediated embryonic lethality will be addressed in the future through follow‐up studies on ribosome biogenesis, global protein synthesis, and identification of RPL13a target genes using chromatin immunoprecipitation and RNA‐immunoprecipitation‐based sequencing.

Overexpression of S30 Ribosomal Protein Leads to Transcriptional and Metabolic Changes That Affect Plant Development and Responses to Stress

“…Studies employing S. cerevisiae also provide evidence that RP effect transcription as over-production of specific ribosomal proteins repress mutations of RNA Pol III in S. cerevisiae [55,56]. These and other studies indicate that individual ribosomal proteins have extra-ribosomal functions in addition to those in the translation machinery [57][58][59][60]. Future studies must elucidate the mechanism by which S30 influences transcription.…”