Biological materials exhibit complex nanotopology, i.e., a composite liquid and solid phase structure that is heterogeneous on the nanoscale. The diffusion of nanoparticles in nanotopological environments can elucidate biophysical changes associated with pathogenesis and disease progression. However, there is a lack of methods that characterize nanoprobe diffusion and translate easily to in vivo studies. Here, we demonstrate a method based on optical coherence tomography (OCT) to depth-resolve diffusion of plasmon-resonant gold nanorods (GNRs) that are weakly constrained by the biological tissue. By using GNRs that are on the size scale of the polymeric mesh, their Brownian motion is minimally hindered by intermittent collisions with local macromolecules. OCT depth-resolves the particleaveraged translational diffusion coefficient (D T ) of GNRs within each coherence volume, which is separable from the nonequilibrium motile activities of cells based on the unique polarized light-scattering properties of GNRs. We show how this enables minimally invasive imaging and monitoring of nanotopological changes in a variety of biological models, including extracellular matrix (ECM) remodeling as relevant to carcinogenesis, and dehydration of pulmonary mucus as relevant to cystic fibrosis. In 3D ECM models, D T of GNRs decreases with both increasing collagen concentration and cell density. Similarly, D T of GNRs is sensitive to human bronchial-epithelial mucus concentration over a physiologically relevant range. This novel method comprises a broad-based platform for studying heterogeneous nanotopology, as distinct from bulk viscoelasticity, in biological milieu.dynamic light scattering | plasmon resonance | nanoparticle diffusion | diffusion in mucus | diffusion in extracellular matrix B iological fluids (e.g., blood, mucus, saliva, synovial fluids) and soft solids [e.g., collagen, extracellular matrix (ECM), cytoskeleton] consist of a milieu of small molecules (making up the solvent) and large molecules (proteins and polymers making up the mesh or matrix) that are collectively responsible for their viscoelastic nature. Traditional rheological methods characterize the bulk viscoelastic properties of such biological media. However, nanoscopic objects, such as viruses and drugs that are smaller than the polymeric correlation length of the biological tissue network, encounter mechanical environments that are entirely different from that described by bulk viscoelasticity. For instance, at the nanoscale, mucus is a heterogeneous network of mucin fibers, nonmucin proteins, cell debris, lipids, DNA, actin filaments, and salts in a low-viscosity interstitial fluid (1). Similarly, tissue ECM, although soft solid-like in bulk, is an interconnected mesh of elongated protein fibers riddled with pores that are filled with low-viscosity interstitial fluids.Microrheological techniques based on the generalized StokesEinstein relation (2-5) are capable of converting the observed diffusion of probes of controlled hydrodynamic size into a mea...