Residues from several transmembrane (TM) segments of P-glycoprotein (P-gp) likely form the drug-binding site(s). To determine the organization of the TM segments, pairs of cysteine residues were introduced into the predicted TM segments of a Cys-less P-gp, and the mutant protein was subjected to oxidative cross-linking. In SDS gels, the cross-linked product migrated with a slower mobility than the native protein. The crosslinked products were not detected in the presence of dithiothreitol. Cross-linking was observed in 12 of 125 mutants. The pattern of cross-linking suggested that TM6 is close to TMs 10, 11, and 12, while TM12 is close to TMs 4, 5, and 6. In some mutants the presence of drug substrate colchicine, verapamil, cyclosporin A, or vinblastine either enhanced or inhibited cross-linking. Cross-linking was inhibited in the presence of ATP plus vanadate. These results suggest that the TM segments critical for drug binding must be close to each other and exhibit different conformational changes in response to binding of drug substrate or vanadate trapping of nucleotide. Based on these results, we propose a model for the arrangement of the TM segments.The multidrug resistance P-glycoprotein (P-gp 1 ; product of the human MDR1 gene) uses energy from ATP hydrolysis to pump a broad range of cytotoxic compounds out of the cell. It is found in the plasma membrane of cells lining the gastrointestinal tract, the brush border of renal proximal tubules, on the biliary face of hepatocytes (1), or on the luminal surface of capillary endothelial cells of the brain and testes (1, 2). The location of P-gp in tissues, together with studies on P-gp "knock-out" mice suggest that P-gp likely protects the organism from toxic xenobiotics (3). P-gp is clinically important because it contributes to the phenomenon of multidrug resistance during AIDS (4) and cancer chemotherapies (reviewed in Ref. 5). The protein is a member of the ATP-binding cassette family of transporters (6). The 1280 amino acids of P-gp are organized in two tandem repeats of 610 amino acids that are joined by a linker region of 60 amino acids (7, 9).The mechanism that allows P-gp to recognize such a broad range of compounds is unknown. Both halves of P-gp are required for substrate-stimulated ATPase activity (10) and for drug binding (11). It was recently shown that the TM domains alone could mediate drug binding (12). A deletion mutant lacking both nucleotide-binding domains could still interact with drug substrates. The drug-binding site(s) in P-gp likely consists of residues from multiple TM segments (13). Understanding the mechanism of drug recognition by P-gp will require knowledge about the packing of the TM segments and their response to the presence of different substrates.In this study, the packing and flexibility of the TMs of P-gp were examined by disulfide cross-linking analysis. Pairs of cysteine residues were introduced into the predicted TM segments of a mutant Cys-less P-gp. The mutant proteins were assayed for disulfide cross-linking.
EXPERIM...