In situ hybridization was used to study the site and timing of the expression of nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), neurotrophin 3 (NT-3), and neurotrophin 5 (NT-5) mRNAs in the developing inner ear of the rat. In the sensory epithelia, the levels of NGF and NT-5 mRNAs were below the detection limit. NT-3 and BDNF mRNAs were expressed in the otic vesicle in overlapping but also in distinct regions. Later in development, transcripts were localized to the differentiating sensory and supporting cells of the auditory organ and vestibular maculae.In these sensory epithelia, the intensity of NT-3 mRNA expression decreased in parallel with maturation. The expression of BDNF mRNA was restricted to the sensory cells of both the auditory and vestibular organs, including ampullary cristae. In bioassays, BDNF and NT-3, but not NGF, at physiological concentrations induced neurite outgrowth from the statoacoustic ganglion explants. These results demonstrate that NT-3 and BDNF, rather than NGF and NT-5, are the primary neurotrophins present in the target fields of the cochlear and vestibular neurons. Expression of NT-3 and BDNF mRNAs in the otic vesicle before and during the ingrowth of neurites from the statoacoustic ganglion suggests that NT-3 or BDNF or both may serve as chemoattractants for the early nerve fibers. The results also suggest that these neurotrophins have a role in later development of the cochlear and vestibular neurons.Development of the vertebrate inner ear from the otic placode into cochlear and vestibular sensory organs, including their respective ganglia, is a complex process which requires the action of several factors regulating proliferation and differentiation (1). By synthesizing controlled quantities and types of neurotrophic factors, peripheral and central targets of sensory systems can selectively support appropriate numbers and kinds of neurons that innervate them (2).In avian and rat embryos, low-affinity nerve growth factor (NGF) receptor (gp75LNGFR) and its mRNA have been localized to the otic placode and otic vesicle, to nonsensory cells of the developing organ of Corti, and to developing inner ear ganglia (3-5). Binding studies have demonstrated the presence of NGF receptors in the statoacoustic ganglion (SAG) and its target, the otic vesicle (6-8). In addition, an otic conditioned medium-and NGF-induced neurite outgrowth from the SAG has been shown in vitro (9, 10). These data suggest that NGF exerts some action on the developing inner ear. However, to date the NGF family of factors, the neurotrophins, includes five members: NGF (11), brain-derived neurotrophic factor (BDNF) (12, 13), neurotrophin 3 (NT-3) (14-17), neurotrophin 4 (NT-4) (18), and neurotrophin 5 (NT-5) (19), sharing almost 60%o amino acid identity. All neurotrophins (not shown for NT-5) bind to gp75LNGFR with low-affinity kinetics (18,20).Furthermore, the members of the Trk family of proteintyrosine kinase receptors likewise bind neurotrophins with low and high affinity (21-23). Th...