The existence of ⌬4 fatty acid desaturation in the biosynthesis of docosahexanoic acid (DHA) has been questioned over the years. In this report we describe the identification from Thraustochytrium sp. of two cDNAs, Fad4 and Fad5, coding for ⌬4 and ⌬5 fatty acid desaturases, respectively. The ⌬4 desaturase, when expressed in Saccharomyces cerevisiae, introduced a double bond at position 4 of 22:5(n-3) and 22:4(n-6) resulting in the production of DHA and docosapentanoic acid. The enzyme, when expressed in Brassica juncea under the control of a constitutive promoter, desaturated the exogenously supplied substrate 22:5(n-3), resulting in the production of DHA in vegetative tissues. These results support the notion that DHA can be synthesized via ⌬4 desaturation and suggest the possibility that DHA can be produced in oilseed crops on a large scale.Long chain polyunsaturated fatty acids (LCPUFAs) 1 such as docosahexanoic acid (DHA) 22:6(4,7,10,13,16,19) are essential components of the cell membranes of various tissues and organelles such as retina and brain in mammals. For instance, over 30% of fatty acids in brain phospholipid are 22:6(n-3) and 20:4(n-6) (1). In retina, DHA accounts for more than 60% of the total fatty acids in the rod outer segment, the photosensitive part of the photoreceptor cell (2). Clinical studies show that DHA is essential for the growth and development of the brain in infants and for maintenance of normal brain function in adults (3). DHA also has significant effects on photoreceptor function involved in the signal transduction process, rhodopsin activation, and rod and cone development (2). In addition, some positive effects of DHA are also found on diseases such as hypertension, arthritis, atherosclerosis, depression, thrombosis, and cancer (4). Therefore, an appropriate dietary supply of this fatty acid is vital for humans to stay healthy. It is particularly important for infants, young children, and senior citizens to have an adequate intake of these fatty acids from the diet because the fatty acids cannot be synthesized efficiently in the body (5).DHA is a fatty acid of the (n-3) series, according to the location of the last double bond at the methyl end. It is synthesized via alternating steps of desaturation and elongation. Starting with 18:3(9,12,15), the biosynthesis of DHA involves ⌬6 desaturation to 18:4(6,9,12,15), followed by elongation to 20:4(8,11,14,17) and ⌬5 desaturation to 20:5(5,8,11,14,17). Beyond this point there are some controversies about the biosynthesis. The conventional view is that 20:5(5,8,11,14,17) is elongated to 22:5(7,10,13,16,19) and then converted to 22: 6(4,7,10,13,16,19) by the final ⌬4 desaturation (6 -7). However, Sprecher and co-workers (8 -11) recently suggested an alternative pathway for DHA biosynthesis that is independent of ⌬4 desaturase, involving two consecutive elongations, a ⌬6 desaturation in microsome and a two-carbon shortening via limited -oxidation in peroxisomes.Thraustochytrids are a common type of marine microheterotroph and...