In Candida albicans, the quorum-sensing molecule farnesol inhibits the transition from yeast to hyphae but has no effect on cellular growth. We show that the addition of exogenous farnesol to cultures of Candida parapsilosis causes the cells to arrest, but not at a specific stage in the cell cycle. The cells are not susceptible to additional farnesol. However, the cells do eventually recover from arrest. Unlike in C. albicans, in C. parapsilosis sterols are localized to the tips of budding cells, and this polarization is disrupted by the addition of farnesol. We used the results of a genome sequence survey to design and manufacture partial genomic microarrays that were applied to determining the transcriptional response of C. parapsilosis to the presence of exogenous farnesol. In both C. albicans and C. parapsilosis, exposure to farnesol results in increased expression of the oxidoreductases GRP2 and ADH7 and altered expression of genes involved in sterol metabolism. There is no effect on expression of C. parapsilosis orthologs of genes involved in hyphal growth in C. albicans. Farnesol therefore differs significantly in its effects on C. parapsilosis and C. albicans.Although Candida albicans is the most common cause of candidiasis, other species are becoming increasingly prevalent. Candida parapsilosis is now frequently reported as the most common non-albicans species in bloodstream infections in Europe (3, 38, 39), North America (14, 39), and Latin America (38, 39). Recent epidemiological studies ranked C. parapsilosis as the most prevalent yeast isolated from patients diagnosed with candidemia in a Japanese hospital in a 10-year period (39.2%) (33) and in a pediatric unit in Brazil (38.5%) (38). C. parapsilosis infections are predominantly associated with premature neonates, the presence of central venous catheters, and parenteral nutrition. C. parapsilosis, like other Candida species, can form biofilms on plastic medical devices, which confers resistance to antifungal drugs (4). Biofilm formation in C. albicans is associated with the switch from the yeast to the hyphal mode of growth (41). Unlike C. albicans strains, C. parapsilosis strains do not form true hyphae (36).The formation of biofilms by C. albicans is inhibited by the addition of the isoprenoid alcohol farnesol (40). Farnesol is generated by dephosphorylation of farnesyl pyrophosphate, a key metabolic intermediate in the highly conserved sterol biosynthesis pathway in mammalian and yeast cells (11,34,47). In C. albicans, farnesol acts as a quorum-sensing agent (17). It inhibits the yeast-to-hypha transition without affecting the growth rate (17). However, the addition of exogenous farnesol inhibits growth in Saccharomyces cerevisiae (27) and triggers apoptosis in Aspergillus nidulans (45). Farnesol also reduces biofilm formation by C. parapsilosis, although because there is no link to hyphal growth, it is likely that the mechanism is different from that of C. albicans (25).Until recently, little was known about the genome of C. parapsilosis. The c...