Linkage maps of the apple (Malus × domestica Borkh.) cvs ‘Ralls Janet’ and ‘Delicious’ include newly developed EST markers

Igarashi, Mamoru; Abe, Yoshie; Hatsuyama, Yoshimichi; Ueda, Takanori; Fukasawa-Akada, Tomoko; Kon, Tadamasa; Kudo, Tsuyoshi; Sato, Takashi; Suzuki, Masahiko

doi:10.1007/s11032-008-9159-5

Cited by 21 publications

(13 citation statements)

References 63 publications

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“…Differences in the order and the location of the loci can be also caused by inversions and translocations (Liebhard & Gessler 2000). Some rearrangement of markers in small regions of apple maps, indicated as single inversion events caused by local inconsistency in marker order, was reported by other authors too, and was explained as a result of differences in recombination frequencies between the parents of the mapping populations (Silfverberg- Dilworth et al 2006, Igarashi et al 2008, N'Diaye et al 2008. The presence of many rearrangements detected in other Rosaceous species confirmed this theory (Klagges et al 2013).…”

Section: Discussionsupporting

confidence: 65%

“…Improvement of the mapping technology resulted in maps for many other cultivars including: 'Wijcik McIntosh' (WM), NY 75441-67, NY 75441-58, 'Telamon', 'Braeburn', 'Prima', 'Fiesta', 'Discovery', 'Ralls Janet', 'Delicious', covering from 842 cM (Conner et al 1997, Maliepaard et al 1998, Kenis & Keulemans 2005, Igarashi et al 2008 to almost 2000 cM in integrated maps (N'Diaye et al 2008. The maps were constructed and saturated using RAPD (Random Amplified Polymorphic DNA), RFLP (Restriction Fragment Length Polymorphism), AFLP (Amplified Fragment Length Polymorphism) (Hemmat et al 1994, Maliepaard et al 1998, Liebhard et al 2002, 2003, and more recently SSR (Simple Sequence Repeat), SNP (Single Nucleotide Polymorphism) (Silfverberg-Dilworth et al 2006, Igarashi et al 2008, cDNA microarray (Soglio et al 2009) and diversity array technology (DArT) based markers (Schouten et al 2012). Among them many sequences were linked to economically important traits such as plant resistance to pests and diseases, plant growth habit, fruit colour, acidity and sweet taste (Korban & Tartarini 2009).…”

Section: Introductionmentioning

confidence: 99%

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Identification of Four New Est-Based Markers on the Apple (MALUS ⋉ DOMESTICA) Genetic Map

Keller-Przybyłkowicz

Korbin

2014

Journal of Horticultural Research

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The map of the linkage groups: LG2, LG12 and LG14, which are expected to contain QTLs related to fruit quality, was generated by analysis of 56 individuals of the cross: 'Retina' × 'Topaz'. Twenty three of the 27 SSR markers covered 225 cM in 'Retina' and 371 cM in 'Topaz' genome. High level of colinearity (~ 85%) was found between obtained map and the respective map regions of 'Fiesta', 'Discovery', 'Ralls Janet' and 'Delicious'. Only single inversions of marker positions were noted, predominantly in 'Topaz'. CAPS and SSCP/SNP markers in seven ESTs, chosen based on the metabolic pathways of ascorbic acids and sugar, were identified. Four of the CAPS markers, linked to the genes coding: UDP glucose : flavonoid 3-o-glucosyl transferase, ascorbate peroxidase, and two sugar transporters, were mapped on LG2 (GFglTra -both cultivars), LG12 (PGiso1B and PSTS -'Topaz') and LG14 (PST -'Retina'). According to our knowledge, loci of these markers have never been identified on the apple genome map.

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Section: Discussionsupporting

confidence: 65%

Section: Introductionmentioning

confidence: 99%

Identification of Four New Est-Based Markers on the Apple (MALUS ⋉ DOMESTICA) Genetic Map

Keller-Przybyłkowicz

Korbin

2014

Journal of Horticultural Research

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“…In recent years, in silico approaches have been effectively utilized to detect SSR amplifying genic regions (Igarashi et al, 2008;Woodhead et al, 2008). The development of SSR markers following the conventional approach of genomic library construction is time consuming (Zane et al, 2002) and resource intensive (Squirrell et al, 2003).…”

Section: Discussionmentioning

confidence: 99%

Identification and functional annotation of expressed sequencetags based SSR markers of Stevia rebaudiana

Kaur¹,

Sharma²,

Raina³

2015

Turk J Agric For

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“…1). A new series of apple SSRs have been recently developed and mapped (Igarashi et al 2008;Van Dyk 2008) some of which are located in the current gaps (e.g., LG15). New pear SSRs have also been developed (Fernández-Fernández et al 2006;Inoue et al 2007) and others are in development (Yamamoto T. personal communication).…”

Section: Set Of Ssrsmentioning

confidence: 99%

“…More than 300 SSRs have been developed in apple (Guilford et al 1997;Gianfranceschi et al 1998;Hokanson et al 1998;Liebhard et al 2002;Hemmat et al 2003;Vinatzer et al 2004, Silfverberg-Dilworth et al 2006, Khan et al 2007, Igarashi et al 2008Van Dyk 2008). In addition, the use of pear SSRs can be explored as it has been demonstrated that they can generally be transferred to the apple and vice versa (Yamamoto et al 2002;Pierantoni et al 2004;Silfverberg-Dilworth et al 2006) due to the high level of synteny between the two species.…”

Section: Introductionmentioning

confidence: 99%

Development and test of 21 multiplex PCRs composed of SSRs spanning most of the apple genome

Patocchi

Fernández-Fernández

Evans

et al. 2008

Tree Genetics & Genomes

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A series of 21 multiplex (MP) polymerase chain reactions containing simple sequence repeat (SSR) markers spanning most of the apple genome has been developed. Eighty-eight SSR markers, well distributed over all 17 linkage groups (LGs), have been selected. Eighty-four of them were included in 21 different MPs while four could not be included in any MPs. The 21 MPs were then used to genotype approximately 2,000 DNA samples from the European High-quality Disease-Resistant Apples for a Sustainable agriculture project. Two SSRs (CH01d03 and NZAL08) were discarded at an early stage as they did not produce stable amplifications in the MPs, while the scoring of the multilocus (ML) SSR Hi07d11 and CN44794 was too complex for large-scale genotyping. The testing of the (2) the size range of the alleles amplified; (3) the identification of additional unmapped loci of some ML SSRs; (4) the development of methods to assign alleles to the different loci of ML SSRs and (5) conditions at which an SSR previously described as ML would amplify alleles of a single locus to be determined. These data resulted in the selection of 75 SSRs out of the 80 that are well suited and recommended for large genotyping projects.

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Linkage maps of the apple (Malus × domestica Borkh.) cvs ‘Ralls Janet’ and ‘Delicious’ include newly developed EST markers

Cited by 21 publications

References 63 publications

Identification of Four New Est-Based Markers on the Apple (MALUS ⋉ DOMESTICA) Genetic Map

Identification of Four New Est-Based Markers on the Apple (MALUS ⋉ DOMESTICA) Genetic Map

Identification and functional annotation of expressed sequencetags based SSR markers of Stevia rebaudiana

Development and test of 21 multiplex PCRs composed of SSRs spanning most of the apple genome

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