Linkage map of Japanese black pine based on AFLP and RAPD markers including markers linked to resistance against the pine needle gall midge

Hayashi, Eiji; Kondo, Tohru; Terada, Kinya; Kuramoto, Noritsugu; Gotö, Yökö; Okamura, Masanori; Kawasaki, Hideki

doi:10.1007/s001220000470

Cited by 13 publications

(9 citation statements)

References 13 publications

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“…Hence, the present study revealed that SRAP markers were feasible for genetic map construction of Pinus species. In the published genetic maps in Pinus species, random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP) have been commonly used (Nelson et al 1993;Dale 1994;Kubisiak et al 1995;Echt and Nelson 1997;Remington et al 1999;Arcade et al 2000;Hayashi et al 2001;Li and Yeh 2001;Shepherd et al 2003;Yin et al 2003;Kim et al 2005). However, RAPD method performs weak repeatability and AFLP technique is hard to operate (Grivet et al 2003).…”

Section: Discussionmentioning

confidence: 98%

“…To speed up the breeding process and to shorten the selection time, quantitative trait loci (QTL) and marker-assisted selection have been widely used. There are a number of genetic maps reported in other pine species (Nelson et al 1993;Dale 1994;Kubisiak et al 1995;Echt and Nelson 1997;Sewell et al 1999;Arcade et al 2000;Costa et al 2000;Li and Yeh 2001;Hayashi et al 2001;Wilcox et al 2001;Ritter et al 2002;Shepherd et al 2003;Yin et al 2003;Zhou et al 2003;Krutovsky et al 2004;Kim et al 2005), yet a linkage map for Korean pine is still unavailable.…”

Section: Introductionmentioning

confidence: 95%

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Construction of a framework map for Pinus koraiensis Sieb. et Zucc. using SRAP, SSR and ISSR markers

Chen

Feng

Sui

et al. 2010

Trees

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Genetic linkage maps are essential for molecular breeding program. The first genetic linkage map of Pinus koraiensis, using an F1 progeny of 94 individuals, was constructed in the present paper. One hundred and twenty-two molecular markers were mapped onto 11 linkage groups, 1 triple and 8 pairs at the linkage criteria LOD 4.0. Among these markers, there were 96 sequencerelated amplified polymorphism (SRAP) markers, 25 simple sequence repeat (SSR) markers, and 1 inter-simple sequence repeat (ISSR) marker. The consensus map gained covers 857.464 cM Kosambi (K) with an average marker spacing of 7.03 cM K. The presented map provides a basis and crucial information for future genomic studies of P. koraiensis, in particular for quantitative trait loci (QTL) mapping of economically important breeding target traits.

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Section: Discussionmentioning

confidence: 98%

Section: Introductionmentioning

confidence: 95%

Construction of a framework map for Pinus koraiensis Sieb. et Zucc. using SRAP, SSR and ISSR markers

Chen

Feng

Sui

et al. 2010

Trees

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“…Although the quantity of this tissue contained in a single seed is usually very limited, there is enough to generate sufficient PCR-based anonymous markers for mapping purposes. Most of the linkage maps in pine have been constructed from megagametophytes (Nelson et al 1993;Travis et al 1998;Remington et al 1999;Costa et al 2000;Hayashi et al 2001). However, a few studies have been based on diploid progenies derived from different generations of crosses, including: loblolly pine (e.g.…”

Section: Introductionmentioning

confidence: 99%

Nearly complete genetic maps of Pinus sylvestris L. (Scots pine) constructed by AFLP marker analysis in a full-sib family

et al. 2003

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We have constructed nearly complete linkage maps of Pinus sylvestris (L.) using AFLP markers based on a two-way pseudo-testcross strategy in a full-sib family founded in an advanced breeding program. With 39 primer combinations, a total of 737 markers (320 from the mother and 417 from the father) segregated in a 1:1 ratio, corresponding to DNA polymorphism: heterozygous in one parent and null in the other. In the maternal parent, 188 framework markers were mapped in 12 linkage groups, equivalent to the Pinus haploid chromosome number, with a total coverage of 1,695.5 cM. In the paternal parent, 245 framework markers established a map with 15 linkage groups, spanning a genome length of 1,718.5 cM. The estimated total map length was L(F) = 1,681 cM for the female and L(M) = 1,645 cM for the male using a modified method-of-moment estimator. Combining these values with those estimated from the observed map lengths in both parents, we estimated the genome length in Scots pine to be between 1,600 and 2,100 cM. Our genome coverage was estimated to be more than 98% with a framework marker interval of 20 cM for both parents. Most of the female and male linkage groups were associated through the analysis of the intercross markers.

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“…In major agricultural crops (e.g., Sardesai et al, 2002) and in Arabidopsis (e.g., Kliebenstein et al, 2002), molecular markers or QTLs for insect resistance have been identified, whereas identification of insect resistance QTLs in trees is rare (Hayashi et al, 2001). No other study has, to our knowledge, identified herbivory QTLs for Salix .…”

Section: Qtl Identificationmentioning

confidence: 99%

“…Knowledge about the plant characters related to resistance can make selecting for resistance in segregating plant populations more efficient. Such markers for resistance to insects in trees are even more rare (Hayashi et al, 2001). Molecular markers have been identified for resistance to pathogens in a few tree species Li & Yeh, 2002).…”

Section: Introductionmentioning

confidence: 99%

Quantitative trait loci for resistance to herbivores in willow: field experiments with varying soils and climates

Rönnberg‐Wästljung

Åhman²,

Glynn

et al. 2006

Entomologia Exp Applicata

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As a basis for genetic improvement of willow ( Salix spp.) for use in wood biomass production, quantitative trait loci (QTLs) responsible for resistance to herbivores have been identified in a tetraploid hybrid F 2 population originating from a cross between Salix dasyclados (Wimm.) and Salix viminalis (L.) (Salicaceae). Symptoms of herbivory, caused by various insects and game, and, in addition, leaf rust, were assessed in three field locations with varying soils and climates. Eleven damage traits (lost leaf area, leaf discoloration, leaf blisters, leaf-mite symptoms, leaf-margin cuts, and various estimates of shoot-tip damage by a gall midge, game, and lepidopterans) were submitted to QTL analysis. A composite interval mapping approach was used to estimate the number of QTLs, the magnitude of the QTLs, and their position on genetic linkage maps. Most of the identified QTLs were specific for each trait and location, but a few QTLs common across the locations were also detected. Each QTL explained between 8 and 24% of the phenotypic variation, depending on damage trait and field location. Clusters of QTLs for different traits were found at several linkage groups, indicating either a common genetic base or tightly linked QTL. Our results emphasize the need for verification of QTL studies over different environments.

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Linkage map of Japanese black pine based on AFLP and RAPD markers including markers linked to resistance against the pine needle gall midge

Cited by 13 publications

References 13 publications

Construction of a framework map for Pinus koraiensis Sieb. et Zucc. using SRAP, SSR and ISSR markers

Construction of a framework map for Pinus koraiensis Sieb. et Zucc. using SRAP, SSR and ISSR markers

Nearly complete genetic maps of Pinus sylvestris L. (Scots pine) constructed by AFLP marker analysis in a full-sib family

Quantitative trait loci for resistance to herbivores in willow: field experiments with varying soils and climates

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