Linear Time Online Algorithms for Constructing Linear-size Suffix Trie

Abstract

The suffix trees are fundamental data structures for various kinds of string processing. The suffix tree of a text string T of length n has O(n) nodes and edges, and the string label of each edge is encoded by a pair of positions in T . Thus, even after the tree is built, the input string T needs to be kept stored and random access to T is still needed. The linear-size suffix tries (LSTs), proposed by Crochemore et al. [Linear-size suffix tries, TCS 638:171-178, 2016], are a "stand-alone" alternative to the suffix trees. Namely, the LST of an input text string T of length n occupies O(n) total space, and supports pattern matching and other tasks with the same efficiency as the suffix tree without the need to store the input text string T . Crochemore et al. proposed an offline algorithm which transforms the suffix tree of T into the LST of T in O(n log σ) time and O(n) space, where σ is the alphabet size. In this paper, we present two types of online algorithms which "directly" construct the LST, from right to left, and from left to right, without constructing the suffix tree as an intermediate structure. Both algorithms construct the LST incrementally when a new symbol is read, and do not access the previously read symbols. Both of the right-to-left construction algorithm and the left-to-right construction algorithm work in O(n log σ) time and O(n) space. The main feature of our algorithms is that the input text string does not need to be stored.

Linear-time computation of DAWGs, symmetric indexing structures, and MAWs for integer alphabets

“…It is known that one can restore the whole edge label efficiently on LSTrie(y), without explicitly storing the input string y [14,40,41]. Now the following corollary is immediate from Theorem 6 and Theorem 7: As an application to our O(n)-time DAWG construction algorithm of Section 4, in this section we show an optimal time algorithm to compute the set of all minimal absent words of a given string over an integer alphabet.…”