2021
DOI: 10.1088/1741-2552/ac310a
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Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments

Abstract: Objective. Neural activity represents a functional readout of neurons that is increasingly important to monitor in a wide range of experiments. Extracellular recordings have emerged as a powerful technique for measuring neural activity because these methods do not lead to the destruction or degradation of the cells being measured. Current approaches to electrophysiology have a low throughput of experiments due to manual supervision and expensive equipment. This bottleneck limits broader inferences that can be … Show more

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Cited by 8 publications
(5 citation statements)
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References 52 publications
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“…Our software provides a structured analysis template, while its backend incorporates essential features that are frequently used for analysis, eliminating the need for user implementation or maintenance. These features include caching, data pipelining, [ 42 ] filtering, [ 43 , 44 , 45 ] spike detection, [ 46 , 47 ] principal component analysis (PCA), [ 48 ] burst detection, [ 49 ] criticality analysis, [ 49 , 50 ] as well as an array of visualization functions. [ 51 , 52 ] In addition, the software includes HPC support to integrate existing algorithms and pipelines into supercomputing clusters, [ 53 ] enabling parallel processing, and I/O capabilities [ 54 ] to accelerate large‐scale analysis.…”
Section: Platform Overviewmentioning
confidence: 99%
“…Our software provides a structured analysis template, while its backend incorporates essential features that are frequently used for analysis, eliminating the need for user implementation or maintenance. These features include caching, data pipelining, [ 42 ] filtering, [ 43 , 44 , 45 ] spike detection, [ 46 , 47 ] principal component analysis (PCA), [ 48 ] burst detection, [ 49 ] criticality analysis, [ 49 , 50 ] as well as an array of visualization functions. [ 51 , 52 ] In addition, the software includes HPC support to integrate existing algorithms and pipelines into supercomputing clusters, [ 53 ] enabling parallel processing, and I/O capabilities [ 54 ] to accelerate large‐scale analysis.…”
Section: Platform Overviewmentioning
confidence: 99%
“…Yet, because of the high costs and experimental complexity associated with these experiments, HD MEAs have not been introduced in the classroom. We have previously developed an Internet-connected electrophysiology platform that allows the users to record from MEAs remotely (Voitiuk et al, 2021). This technology could become key for cloud-enabled PBL (Baudin et al, 2022b), in which students use experimental platforms that are not located at or owned by their own institutions.…”
Section: Electrophysiology Software Programs Run On Organoids In a Ne...mentioning
confidence: 99%
“…New engineering approaches are urgently needed to advance the capacity for performing longitudinal extracellular recordings from cultured organoids with minimal interference to their normal neurodevelopmental processes, and exciting solutions are currently being developed [ 21 , 22 , 23 ]. Integration of such systems with cloud-enabled infrastructure for data processing will be necessary to provide scalability of such methods and wide adoption by the scientific community [ 24 ].…”
Section: Characterizationmentioning
confidence: 99%