2015
DOI: 10.1002/jbio.201500106
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Light distribution and thermal effects in the rat brain under optogenetic stimulation

Abstract: Optical brain stimulation gained a lot of attention in neuroscience due to its superior cell-type specificity. In the design of illumination strategies, predicting the light propagation in a specific tissue is essential and requires knowledge of the optical properties of that tissue. We present the estimated absorption and reduced scattering in rodent brain tissue using non-destructive contact spatially resolved spectroscopy (cSRS). The obtained absorption and scattering in the cortex, hippocampus and striatum… Show more

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Cited by 38 publications
(39 citation statements)
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“…Regarding MC simulations, strong limitations also arise from the enormous simulation times associated with complex voxelized heterogeneous geometries24 and lack of validated optical properties measured in vivo , despite on-going efforts2526. In this context, our experimental light distribution measurements reveal that the extent of light distribution relative to the fiber is larger in the lateral than axial axis, which is not reported in the vast literature of analytical calculations or Monte Carlo simulations of fiber guided light in cerebral tissue212327. Although the fiber output is an extended source and not a point source, this result was unexpected, considering the high forward diffusion anisotropy of brain tissue.…”
Section: Discussionmentioning
confidence: 86%
“…Regarding MC simulations, strong limitations also arise from the enormous simulation times associated with complex voxelized heterogeneous geometries24 and lack of validated optical properties measured in vivo , despite on-going efforts2526. In this context, our experimental light distribution measurements reveal that the extent of light distribution relative to the fiber is larger in the lateral than axial axis, which is not reported in the vast literature of analytical calculations or Monte Carlo simulations of fiber guided light in cerebral tissue212327. Although the fiber output is an extended source and not a point source, this result was unexpected, considering the high forward diffusion anisotropy of brain tissue.…”
Section: Discussionmentioning
confidence: 86%
“…To compare visible light wavelengths accurately, and thus select the optimal opsin for our studies, we developed techniques to measure visible light propagation omnidirectionally in vivo. Previous optogenetic studies have used visible light propagation measurements and tissue properties derived from in vitro or ex vivo specimens (26)(27)(28)(29)(30)(31)(32). For example, Azimipour et al (33) recently published an atlas of optical properties and predicted light distribution in rat brain tissue.…”
Section: Significancementioning
confidence: 99%
“…Their model was later updated to include information about blood vessels (34), yet all of the data in both reports were derived from 0.5-mm-thick ex vivo slices rather than the intact living brain. Gysbrechts et al (32) similarly sought to ascertain optical properties of fresh rat brain tissue bathed in cold saline, which also contained deoxygenated hemoglobin and likely diluted the blood present in the sample. Gysbrechts et al (32) used these optical measurements to estimate light-induced thermal effects, but did not validate their estimates with in vivo measurements.…”
Section: Significancementioning
confidence: 99%
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“…Targeted illumination with a temporal precision of the order of milliseconds and the spatial precision of few tens of micrometers is a necessity for certain studies such as neuronal signalling11011. Non-targeted illumination is also known to generate abrupt heat effects in regions of non-interests in many studies, hindering their research studies61213. This elucidates the importance of targeted illumination system with an improved spatial and temporal resolution.…”
mentioning
confidence: 99%