2021
DOI: 10.1111/jvim.16293
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Leukocyte and cytokine variables in asymptomatic Pugs at genetic risk of necrotizing meningoencephalitis

Abstract: Background: Necrotizing meningoencephalitis (NME, aka Pug dog encephalitis) is an inflammatory brain condition associated with advanced disease at initial presentation, rapid progression, and poor response to conventional immunomodulatory therapy.Hypothesis/Objectives: That genetic risk for NME, defined by a common germline DNA haplotype located on chromosome 12, is associated with altered blood cytokine concentrations and leukocyte subsets in asymptomatic Pugs.Animals: Forty Pug dogs asymptomatic for NME from… Show more

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Cited by 4 publications
(13 citation statements)
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“…17 After conducting haplotype association analysis in Haploview, we found 5 haplotypes within this LD block in the Barber et al cohort: 1 associated with increased NME risk (88.6% frequency in cases, 27.1% frequency in controls; P = 1.3EÀ13), and the remaining haplotypes were associated with decreased NME risk. 13,16,17 To assess NME risk in this study cohort, we extracted the same 7 SNPs from the Illumina Canine HD BeadChip data and haplotypes were phased using the default options in Beagle 5.2. 21 Dogs in the cohort are defined as having low genomic risk (no genomic risk allele identified) and at genomic risk (presence of 1 or 2 risk alleles).…”
Section: Nme Risk Genotype Assessmentmentioning
confidence: 87%
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“…17 After conducting haplotype association analysis in Haploview, we found 5 haplotypes within this LD block in the Barber et al cohort: 1 associated with increased NME risk (88.6% frequency in cases, 27.1% frequency in controls; P = 1.3EÀ13), and the remaining haplotypes were associated with decreased NME risk. 13,16,17 To assess NME risk in this study cohort, we extracted the same 7 SNPs from the Illumina Canine HD BeadChip data and haplotypes were phased using the default options in Beagle 5.2. 21 Dogs in the cohort are defined as having low genomic risk (no genomic risk allele identified) and at genomic risk (presence of 1 or 2 risk alleles).…”
Section: Nme Risk Genotype Assessmentmentioning
confidence: 87%
“…We identified an LD block of 146 kb encompassing 7 SNPs including the top pug NME GWAS SNP, BICF2P194998 17 . After conducting haplotype association analysis in Haploview , we found 5 haplotypes within this LD block in the Barber et al cohort: 1 associated with increased NME risk (88.6% frequency in cases, 27.1% frequency in controls; P = 1.3E−13), and the remaining haplotypes were associated with decreased NME risk 13,16,17 . To assess NME risk in this study cohort, we extracted the same 7 SNPs from the Illumina Canine HD BeadChip data and haplotypes were phased using the default options in Beagle 5.2 21 .…”
Section: Methodsmentioning
confidence: 99%
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