“…Zootoca vivipara is the terrestrial squamate species with the largest natural distribution, ranging from northwest Spain and Ireland in the West to the Peninsula of Sakhalin (Russia) and Hokkaido (Japan) in the East, and from the southern Balkan (Bulgaria) and the Pyrenees in the south to the Arctic Circle. It has seven well‐defined clades (Surget‐Groba et al, ), a bimodal reproductive pattern, and is a model species for the study of evolution, population dynamics, behavior, coloration, and physiology (Fitze & Le Galliard, ; Gonzalez‐Jimena & Fitze, ; Horvathova et al, ; San‐Jose, Peñalver‐Alcázar, Milá, Gonzalez‐Jimena, & Fitze, ). Because the existing genetic coverage was not sufficient for the envisaged analyses, we amplified three nuclear (nZV1, nZV2, and nZV3; Horreo, Peláez, Suárez, & Fitze, ) and three mitochondrial gene fragments (16S rDNA, 16S: Clary & Wolstenholme, ; cytochrome B, cytB: Smith & Patton, ; and NADH dehydrogenase 2, ND2: Macey, Larson, Ananjeva, Fang, & Papenfuss, ) in 24 individuals belonging to all extant clades (three individuals per clade; Surget‐Groba et al, ), except for clade B, from which 9 individuals were used, three per subclade; Horreo, Palaez, Breedveld, et al, ; Mila, Surget‐Groba, Heulin, Gosá, & Fitze, ) and two outgroups (Tables S2 and S3) following original protocols (Horreo, Peláez, Suárez, & Fitze, ).…”