Left–right (L-R) asymmetry of the internal organs of vertebrates is presaged by domains of asymmetric gene expression in the lateral plate mesoderm (LPM) during somitogenesis. Ciliated L-R coordinators (LRCs) are critical for biasing the initiation of asymmetrically expressed genes, such as
nodal
and
pitx2
, to the left LPM. Other midline structures, including the notochord and floorplate, are then required to maintain these asymmetries. Here we report an unexpected role for the zebrafish EGF-CFC gene
one-eyed pinhead
(
oep
) in the midline to promote
pitx2
expression in the LPM. Late zygotic
oep
(LZ
oep
) mutants have strongly reduced or absent
pitx2
expression in the LPM, but this expression can be rescued to strong levels by restoring
oep
in midline structures only. Furthermore, removing midline structures from LZ
oep
embryos can rescue
pitx2
expression in the LPM, suggesting the midline is a source of an LPM
pitx2
repressor that is itself inhibited by
oep
. Reducing
lefty1
activity in LZ
oep
embryos mimics removal of the midline, implicating
lefty1
in the midline-derived repression. Together, this suggests a model where Oep in the midline functions to overcome a midline-derived repressor, involving
lefty1
, to allow for the expression of left side-specific genes in the LPM.
This article is part of the themed issue ‘Provocative questions in left–right asymmetry’.