Learning tissue representation by identification of persistent local patterns in spatial omics data
Jovan Tanevski,
Loan Vulliard,
Felix Hartmann
et al.
Abstract:Spatial omics data provide rich molecular and structural information about tissues, enabling novel insights into the structure-function relationship. In particular, it facilitates the analysis of the local heterogeneity of tissues and holds promise to improve patient stratification by association of finer-grained representations with clinically relevant features. Here, we introduce Kasumi, a method for the identification of spatially localized neighborhoods of intra- and intercellular relationships, persistent… Show more
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