A flow cytometric method has been developed that uses phase-sensitive detection to separate signals from simultaneous fluorescence emissions in cells labeled with fluorochromes having different fluorescence decay lifetimes. By CHO cells were stained with propidium iodide (PI) and fluorescein isothiocyanate (FITC). These dyes bind to DNA and protein and the fluorescence lifetimes of the bound dyes are 15.0 and 3.6 ns, respectively. Cells were analyzed as they passed through a modulated (sinusoidal) laser excitation beam. Fluorescence was measured using only a longpass filter to block scattered laser excitation light and a single photomultiplier tube detector. The fluorescence detector output signals were processed by dual-channel phase-sensitive detection electronics and the phase-resolved PIand FITC signals were displayed as frequency distribution histograms and bivariate plots. By shifting the phase of one detector channel reference signal by m/2 + degrees and the phase of the other detector channel reference signal by -m/ 2 + +z degrees, where and +z are the phase shifts associated with the PI and FITC lifetimes, the PI and FITC signals were separately resolved at their respective phase-sensitive detector outputs. This technology is also applicable to suppressing background interferences caused by cellular autofluorescence, unbound/free dye, nonspecific dye binding, and Raman and Rayleigh scattering. Key terms: Fluorescence lifetime, phasesensitive detection, propidium iodide, fluorescein isothiocyanate, fluorescence phase-resolved measurement Flow cytometry is a n important clinical diagnostic tool for use in immunology, hematology, and oncology, including its application to basic biomedical research. Clinical tests and biological experiments often require the labeling of cells with multiple fluorochromes for correlated analysis of cellular properties. A major limitation of these procedures is the availability of fluorescent dyes with a common excitation region, i.e., requiring only one excitation source, and emission spectra that are sufficiently separated to permit measurement by multicolor detection methods (18) that employ dichroic and bandpass filters. To alleviate the problem, multiple excitation sources are usually employed (17) to excite sequentially cells labeled with fluorochromes that have separated excitation spectra. This approach has greatly increased the number of fluorochromes available for multicolor labeling studies, but the instrumentation has become increasingly complex in both design and function.We have developed a new flow cytometric method (19) to separate signals from fluorochromes by phaseresolved measurement of fluorescence emission signals. Our intention is to resolve signals from fluorochromes with overlapping emission spectra, but 'Research reported in this article was performed under the auspices of the U.S. Department of Energy.