42Background: Influenza virus infections remain a major and recurrent public health burden. The 43 intrinsic ever-evolving nature of this virus, the suboptimal efficacy of current influenza 44 inactivated vaccines, as well as the emergence of resistance against a limited antiviral arsenal, 45 highlight the critical need for novel therapeutic approaches. In this context, the aim of this study 46 was to develop and validate an innovative strategy for drug repurposing as host-targeted 47 inhibitors of influenza viruses and the rapid evaluation of the most promising candidates in Phase 48 II clinical trials.
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Methods:We exploited in vivo global transcriptomic signatures of infection directly obtained 50 from a patient cohort to determine a shortlist of already marketed drugs with newly identified, 51 host-targeted inhibitory properties against influenza virus. The antiviral potential of selected 52 repurposing candidates was further evaluated in vitro, in vivo and ex vivo. 53 Results: Our strategy allowed the selection of a shortlist of 35 high potential candidates out of a 54 rationalized computational screening of 1,309 FDA-approved bioactive molecules, 31 of which 55 were validated for their significant in vitro antiviral activity. Our in vivo and ex vivo results 56 highlight diltiazem, a calcium channel blocker currently used in the treatment of hypertension, as 57 a promising option for the treatment of influenza infections. Additionally, transcriptomic 58 signature analysis further revealed the so far undescribed capacity of diltiazem to modulate the 59 expression of specific genes related to the host antiviral response and cholesterol metabolism.60 Finally, combination treatment with diltiazem and virus-targeted oseltamivir neuraminidase 61 inhibitor further increased antiviral efficacy, prompting rapid authorization for the initiation of a 62 Phase II clinical trial. 63 4Conclusions: This original, host-targeted, drug repurposing strategy constitutes an effective and 64 highly reactive process for the rapid identification of novel anti-infectious drugs, with potential 65 major implications for the management of antimicrobial resistance and the rapid response to 66 future epidemic or pandemic (re)emerging diseases for which we are still disarmed. 67 68 5 Background 69 Besides their well-known pandemic potential, annual outbreaks caused by influenza viruses 70 account for several million respiratory infections and 250,000 to 500,000 deaths worldwide [1]. 71 This global high morbidity and mortality of influenza infections represents a major and recurrent 72 public health threat with high economic burden. In this context, the suboptimal vaccine coverage 73 and efficacy, coupled with recurrent events of viral resistance against a very limited antiviral 74 portfolio, emphasize an urgent need for innovative treatment strategies presenting fewer 75 obstacles for their clinical use [2]. 76 For decades, the strategy for antiviral development was mostly based on serial screenings of 77 hundreds of thousand...