Abstract:Classical Drosophila eye color mutations have unearthed a toolkit of genes that have permitted candidate gene studies of the outstanding diversity of coloration patterns in other insects. The gene underlying the eye color phenotypes of the red Malphigian tubules (red) fly mutant was mapped to a LysM domain gene of unknown molecular function.
“…Here, we used RNAi to assess roles of selected genes encoding candidate visible markers, testing for detrimental consequences of gene knockdown before proceeding to genome editing. Our experiments verified the role of Of-v in eye color 47,48 and identified a novel role of the Of - xdh / ry gene in body color. We generated three independent Of-v null mutations, each of which has been maintained in lab colony for multiple generations without discernable impact on development.…”
Section: Introductionsupporting
confidence: 73%
“…Recently, RNAi knockdown demonstrated a role for Of - red Malpighian Tubules ( red ) in eye color, while also contributing somewhat to body pigmentation. This gene likely encodes a protein involved in intracellular pigment trafficking and, accordingly, knockdown impacted both ommochrome and pteridine pathways 48 .…”
Insects display a vast array of eye and body colors. Genes encoding products involved in biosynthesis and deposition of pigments are ideal genetic markers, contributing, for example, to the power of Drosophila genetics. Oncopeltus fasciatus is an emerging model for hemimetabolous insects, a member of the piercing-sucking feeding order Hemiptera, that includes pests and disease vectors. To identify candidate visible markers for O. fasciatus, we used parental and nymphal RNAi to identify genes that altered eye or body color while having no deleterious effects on viability. We selected Of-vermilion for CRISPR/Cas9 genome editing, generating three independent loss-of-function mutant lines. These studies mapped Of-vermilion to the X-chromosome, the first assignment of a gene to a chromosome in this species. Of-vermilion homozygotes have bright red, rather than black, eyes and are fully viable and fertile. We used these mutants to verify a role for Of-xdh1, ortholog of Drosophila rosy, in contributing to red pigmentation after RNAi. Rather than wild-type-like red bodies, bugs lacking both vermilion and xdh1 have bright yellow bodies, suggesting that ommochromes and pteridines contribute to O. fasciatus body color. Our studies generated the first gene-based visible marker for O. fasciatus and expanded the genetic toolkit for this model system.
“…Here, we used RNAi to assess roles of selected genes encoding candidate visible markers, testing for detrimental consequences of gene knockdown before proceeding to genome editing. Our experiments verified the role of Of-v in eye color 47,48 and identified a novel role of the Of - xdh / ry gene in body color. We generated three independent Of-v null mutations, each of which has been maintained in lab colony for multiple generations without discernable impact on development.…”
Section: Introductionsupporting
confidence: 73%
“…Recently, RNAi knockdown demonstrated a role for Of - red Malpighian Tubules ( red ) in eye color, while also contributing somewhat to body pigmentation. This gene likely encodes a protein involved in intracellular pigment trafficking and, accordingly, knockdown impacted both ommochrome and pteridine pathways 48 .…”
Insects display a vast array of eye and body colors. Genes encoding products involved in biosynthesis and deposition of pigments are ideal genetic markers, contributing, for example, to the power of Drosophila genetics. Oncopeltus fasciatus is an emerging model for hemimetabolous insects, a member of the piercing-sucking feeding order Hemiptera, that includes pests and disease vectors. To identify candidate visible markers for O. fasciatus, we used parental and nymphal RNAi to identify genes that altered eye or body color while having no deleterious effects on viability. We selected Of-vermilion for CRISPR/Cas9 genome editing, generating three independent loss-of-function mutant lines. These studies mapped Of-vermilion to the X-chromosome, the first assignment of a gene to a chromosome in this species. Of-vermilion homozygotes have bright red, rather than black, eyes and are fully viable and fertile. We used these mutants to verify a role for Of-xdh1, ortholog of Drosophila rosy, in contributing to red pigmentation after RNAi. Rather than wild-type-like red bodies, bugs lacking both vermilion and xdh1 have bright yellow bodies, suggesting that ommochromes and pteridines contribute to O. fasciatus body color. Our studies generated the first gene-based visible marker for O. fasciatus and expanded the genetic toolkit for this model system.
“…The chromosome 18 LOD interval is 500 kb and contains 29 annotated genes ( Table S1 ), including a homolog of the gene red Malpighian tubules ( red ). The red gene is a compelling candidate gene for pterin pigment variation in butterflies, as mutant and knockdown phenotypes in Drosophila and Oncopeltus have suggested a role of this gene in the biogenesis of pigment granule formation, including pterinosomes (Francescutti et al, 2022; Grant et al, 2016). No coding variants were detected in whole genome resequenced individuals from Buckeystown, MA.…”
Section: Resultsmentioning
confidence: 99%
“…The D. melanogaster red mutant shows an accumulation of red ommochromes in the Malpighian Tubules (MTs), and a reduction of ommochromes and pterins in the eyes (Aslaksen and Hadorn, 1957; Ferré et al, 1986; Wessing and Bonse, 1966). In the milkweed bug Oncopeltus fasciatus , RNAi-mediated knockdown of red causes a reduction in pterins in pigmented cuticles, legs, and abdomens, as well as a reduction of ommochromes in the eye (Francescutti et al, 2022). Wing pigmentation is primarily pterin-based in Colias , with no contribution from ommochromes (Wijnen et al, 2007), but the dual effects on both ommochromes and pterins in Drosophila and Oncopeltus suggest that red acts at the level of a biological process that is shared between these pathways.…”
Section: Discussionmentioning
confidence: 99%
“…First, the unique pigment profile of red mutant flies is strikingly similar to the ones observed with two eye-colour mutant alleles of the chocolate (cho) / VhaAC39 gene (Ferré et al, 1986; Grant et al, 2016; Tearle, 1991), which encodes a v-ATPase proton pump essential for endosomal acidification and membrane trafficking in LROs (Allan et al, 2005; Sun-Wada et al, 2003; Yan et al, 2009). Second, homologs of Red contain a LysM domain, and it is their only annotated feature (Francescutti et al, 2022; Grant et al, 2016). The molecular function of this domain is poorly understood in insects, but there is mounting evidence in vertebrates that the LysM domains of several genes interact with the v-ATPase to modulate vacuolar pH across a variety of endosomal organelles (Merkulova et al, 2015; Castroflorio et al, 2021; Eaton et al, 2021; Tan et al, 2022).…”
Continuous colour polymorphisms can serve as a tractable model for the genetic and developmental architecture of traits, but identification of the causative genetic loci is complex due to the number of individuals needed, and the challenges of scoring continuously varying traits. Here we investigated continuous colour variation in Colias eurytheme and C. philodice, two sister species of sulphur butterflies that hybridise in sympatry. Using Quantitative Trait Locus (QTL) analysis of 483 individuals from interspecific crosses and an high-throughput method of colour quantification, we found that two interacting large effect loci explain around 70% of the heritable variation in orange-to-yellow chromaticity. Knockouts of red Malphighian tubules (red), a candidate gene at the primary QTL likely involved in endosomal maturation, resulted in depigmented wing scales showing disorganised pterin granules. The Z sex chromosome contains a large secondary colour QTL that includes the transcription factor bric-a-brac (bab), which we show can act as a modulator of orange pigmentation in addition to its previously-described role in specifying UV-iridescence. We also describe the QTL architecture of other continuously varying traits, and that wing size maps to the Z chromosome, supporting a Large-X effect model where the genetic control of species-defining traits is enriched on sex chromosomes. This study sheds light on the genetic architecture of a continuously varying trait, and illustrates the power of using automated measurement to score phenotypes that are not always conspicuous to the human eye.
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