Therefore, it is only by studying the proteome that we can extract functional understanding of the pathways that are deranged in cancer. Rather than just identifying proteins, functional proteomics focuses on the generation of information about proteins, such as expression levels, PTMs and activity, which directly contribute to a functional understanding of the biological system.Functional proteomics feeds directly into the systematic analysis of biochemical networks, often using mathematical modelling or other systems biology tools. It also provides readouts for chemical biology and chemical genetics necessary to interpret the action of drugs.The growing interest in functional proteomics is not only fuelled by the prospect of a true functional understanding, but also by significant improvements in technology and methodology.Advances in mass spectrometry (MS) have extended the sensitivity, accuracy and speed of analysis to now routinely enable the identification of several thousand proteins per experiment. The introduction of MS methods for accurate relative and absolute protein quantification, and the