ABSTRACT.-G-and C-banded karyotypes of Reithrodontomys raviventris were examined to identify the amount and types of chromosomal change that have occurred in this species. The evolutionary origin and phylogenetic relationships of R. raviventris were evaluated by comparing G-and C-band data with six additional species of Reithrodontomys (fulvescens, creper, mexicanus, megalotis, montanus, and sumichrasti). Banding homologies indicate that the low diploid number forms (raviventris, montanus, megalotis, and sumichrasti) shared a common ancestry and that a major dichotomy exists among these taxa. R. raviventris and R. montanus share a phylogenetic relationship as indicated by 10 shared-derived chromosomal rearrangement events. R. megalotis and R. sumichrasti represent a second well-defined clade. These chromosomal banding data suggest an alternative hypothesis to the traditionally accepted view that R. raviventris is most closely related to R. megalotis.The salt-marsh harvest mouse, Reithrodontomys raviventris, is an endangered species restricted to salt marshes in the San Francisco Bay area. Two subspecies, R. r. raviventris (Dixon, 1908) and R. r. hahcoetes (Dixon, 1909) are recognized, representing southern and northern populations, respectively (Fig. 1). Previous studies have concluded that R. raviventris and another locally abundant harvest mouse, R. megalotis longicaudus, were derived from a common ancestral stock with R. megalotis being the closest living relative of R. raviventris. Hooper's (1944) assessment of San Francisco Bay as an isolating mechanism for speciation of small mammals first introduced the notion of a phylogenetic relationship between R. raviventris and megalotis. Fisler (1965) pursued the idea that R. raviventris was a megalotis derivative in a detailed study of adaptation and speciation of harvest mice in the San Francisco Bay area.Chromosomal studies were undertaken by Shellhammer (1967Shellhammer ( , 1969 to document variability in the three forms of harvest mice from San Francisco Bay. Both subspecies of R. raviventris possess a 2n = 38, FN = 72 karyotype, but vary in chromosomal morphology. The standard karyotype of R. megalotis longicaudus is similar (2n = 42, FN = 80), which led Shellhammer (1967) to propose that the karyotype of R. raviventris had most likely evolved from one like that found in R. megalotis.Recent studies of chromosomal evolution within and among species of Reithrodontomys document that the genus is characterized by a high amount of chromosomal variability (Carleton and Myers, 1979; Robbins and Baker, 1980;Engstrom et al., 1981). On the basis of standard karyotypic data, there appear to be two major groups. One group includes species with high diploid numbers (50-52) and mostly acrocentric elements (Reithrodontomys fulvescens, mexicanus, creper, gracilis, tenuirostris, and humulis). The second assemblage includes species characterized by low diploid number (38-42) and an entirely biarmed karyotype (R. raviventris, montanus, megalotis, and sumichrasti). Carleton and ...