Juvenility and Vegetative Phase Transition in Tropical/Subtropical Tree Crops

Abstract

In plants, juvenile to adult phase transition is regulated by the sequential activity of two microRNAs: miR156 and miR172. A decline in miR156 and increase in miR172 abundance is associated with phase transition. There is very limited information on phase transition in economically important horticultural tree crops, which have a significantly long vegetative phase affecting fruit bearing. Here, we profiled various molecular cues known to be involved in phase transition and flowering, including the microRNAs miR156 and miR172, in three horticultural tree crops: avocado ( Persea americana ), mango ( Mangifera indica ), and macadamia ( Macadamia integrifolia ). We observed that miR156 expression decreases as these trees age and can potentially be used as a juvenility marker. Consistent with findings in annual plants, we also observed conserved regulation of the miR156- SPL3/4/5 regulatory module in these genetically distant tree crops, suggesting that this pathway may play a highly conserved role in vegetative identity. Meanwhile, the abundance of miR172 and its target AP2-like genes as well as the accumulation level of SPL9 transcripts were not related with plant age in these crops except in avocado where miR172 expression increased steadily. Finally, we demonstrate that various floral genes, including AP1 and SOC1 were upregulated in the reproductive phase and can be used as potential markers for the reproductive phase transition. Overall, this study provides an insight into the molecular associations of juvenility and phase transition in horticultural trees where crop breeding and improvement are encumbered by long juvenile phases.

The Critical Role of miRNAs in Regulation of Flowering Time and Flower Development

“…miR156 indirectly regulates the expression level of miR172, these miRNAs negatively regulate their own sets of target genes in such a way that they retain opposite but related effects in flower regulation [23]. The expression level of miR156 remains high during the early seedling stages and subsequently decreases over time with increasing age of the plant, while the inverse is true for miR172, low expression levels during the juvenile phase and accumulates subsequently during the flower developmental process [57,73]. An evolutionarily conserved role of miR156 in the control of flowering is supported by the fact that overexpression lines of Arabidopsis, tobacco, and maize showed delayed flowering phenotypes and extended juvenile phase [74][75][76], whereas overexpression of miR172 accelerates flowering in Arabidopsis [74].…”

Integrative expression network analysis of microRNA and gene isoforms in sacred lotus

“…And the RNA was only used for RT-PCR validation experiments in this study. Meanwhile, the corresponding RNA-seq datasets from our previous study were downloaded from the NCBI Short Read Archive (SRA) accession number PRJNA503979 and PRJNA492157 [55].…”

Integrative expression network analysis of microRNA and gene isoforms in sacred lotus

“…And the RNA was only used for RT-PCR validation experiments in this study. Meanwhile, the corresponding RNA-seq datasets from our previous study were downloaded from the NCBI Short Read Archive (SRA) accession number PRJNA503979 and PRJNA492157 [59].…”

“…To identify the isoforms, the PacBio full-length transcripts were downloaded and mapped to the new lotus reference genome as previously described [59]. Illumina RNA-Seq from petiole, leaf, petal, anther, unpollinated carpel and pollinated carpel were also downloaded to quantify isoform expression.…”