The inner and middle shelf regions of the pericontinental margins of the present-day ocean are distinguished by combinations of directional currents and wave-orbital flows which drive mass transport and separate the water column into a surface and bottom boundary layer (BBL) (Nittouer & Wright, 1994). Such dynamic coastal regions are also where terrestrial, estuarine and marine organic matter is respired at rates much higher than in other sectors of the ocean (Bauer et al., 2013), and where sedimentary deposits include wide expanses of permeable, reworked sands (Jahnke et al., 2005; Swift et al., 1971). Shelf sands often exhibit physical and biological bedforms that induce pore water advection while acting as filters that can trap particulate organic matter (Huettel & Rusch, 2000), and these roughness features are continually shaped by the bottom shear stresses produced by changing waves and currents (Grant & Madsen,