Thyroid hormone (T 3 ) coordinates growth, differentiation, and metabolism by binding to nuclear thyroid hormone receptors (TRs). The TR␣ gene encodes T 3 -activated TR␣1 (NR1A1a) as well as an antagonistic, non-T 3 -binding alternatively spliced product, TR␣2 (NR1A1b). Thus, the TR␣1/TR␣2 ratio is a critical determinant of T 3 action. However, the mechanisms underlying this post-transcriptional regulation are unknown. We have identified a non-consensus, TR␣2-specific 5 splice site and conserved intronic sequences as key determinants of TR␣ mRNA processing. In addition to these cis-acting elements, a novel regulatory feature is the orphan receptor RevErbA␣ (NR1D1) gene, which is transcribed from the opposite direction at the same locus and overlaps the TR␣2 coding region. RevErbA␣ gene expression correlates with a high TR␣1/TR␣2 ratio in a number of tissues. Here we demonstrate that coexpression of RevErbA␣ and TR␣ regulates the TR␣1/TR␣2 ratio in intact cells. Thus, both cis-and trans-regulatory mechanisms contribute to cell-specific post-transcriptional regulation of TR gene expression and T 3 action.
Thyroid hormone receptors (TRs)1 mediate the diverse physiological effects of thyroid hormone (T 3 ) (1-3). TRs are encoded by two closely related genes, erbA␣ and erbA, in all vertebrates (4). Additional receptor diversity is generated by alternative processing of the TR␣ and TR pre-mRNAs. The alternatively spliced isoforms of TR␣, TR␣1 (NR1A1a) (5) and TR␣2 (NR1A1b), are of particular interest. Although both are widely expressed, they are functionally antagonistic. Due to its variant C terminus, TR␣2, unlike TR␣1, does not bind T 3 and lacks the major activation function present in other TRs (6, 7). The dominant negative activity of TR␣2 appears to reflect both competition for binding to TR target genes as well as altered protein-protein interactions (8 -11).Expression of the two TR␣ isoforms is highly regulated, with each mRNA expressed in a tissue-specific and developmentally regulated fashion. In some tissues TR␣2 represents a relatively minor fraction of the TR-related isoforms, while in other tissues such as brain, kidney, and testes, TR␣2 is the most abundant isoform (12, 13). A developmental increase in the T 3 responsiveness of some cells correlates with a decrease in the relative expression of TR␣2 mRNA, suggesting that TR␣2 expression modulates T 3 action (13). Thus, TR␣2 may act as a tissuespecific antagonist of T 3 -responsive gene activation.Interestingly, the alternative post-transcriptional processing of the TR␣ transcript that gives rise to TR␣2 mRNA occurs exclusively in mammals (14 -17). The mammalian TR␣ gene is also remarkable in that it partially overlaps the gene for another nuclear receptor that is encoded on the opposite DNA strand. This receptor gene, RevErbA␣ (RevErb, NR1D1), is convergently transcribed with respect to the TR␣ gene such that its 3Ј end overlaps sequences coding for TR␣2, but not TR␣1 (18,19). The unusual organization of these two genes, which code for structurally re...