Isolation and characterization of microsatellite loci from yellowtail <i>Seriola quinqueradiata</i> and cross‐species amplification within the genus <i>Seriola</i>

Ohara, Eriko; Nishimura, Takuya; Sakamoto, Takashi; Nagakura, Yoshitomo; Mushiake, Keiichi; Okamoto, Nobuaki

doi:10.1046/j.1471-8286.2003.00460.x

Cited by 13 publications

(12 citation statements)

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“…Strategies for its cultivation have been implemented in the United States, Mexico, Ecuador and Spain (Roo et al ., 2010; Sicuro & Luzzana, 2016). Despite the importance of almaco jack, few genetic studies have been published relative to other species in the genus, including Seriola dumerili (Risso 1810) ( e.g ., Gold & Richardson, 1998; Šegvić‐Bubić et al ., 2016); Seriola lalandi Valenciennes 1833 ( e.g ., Miller et al ., 2011; Premachandra et al ., 2017; Purcell et al ., 2015) and Seriola quinqueradiata Temminck and Schlegel 1845 ( e.g ., Ohara et al ., 2003; 2005). Only two published studies on almaco jack exist, a characterization of the mitochondrial genome (Chen et al ., 2016) and an assessment of the diversity at the three mitochondrial and eight microsatellite loci from individuals sampled in the Mediterranean Sea and the eastern Atlantic Ocean (Šegvić‐Bubić et al ., 2016).…”

Section: Introductionmentioning

confidence: 99%

Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management

Mendoza‐Portillo¹,

Galván‐Tirado

Portnoy

et al. 2020

Journal of Fish Biology

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The almaco jack, Seriola rivoliana, is a circumtropical pelagic fish of importance both in commercial fisheries and in aquaculture. To understand levels of genetic diversity within and among populations in the wild, population genetic structure and the relative magnitude of migration were assessed using mtDNA sequence data and single nucleotide polymorphisms (SNPs) from individuals sampled from locations in the Pacific and Atlantic Oceans. A total of 25 variable sites of cytochrome c oxidase subunit 1 and 3678 neutral SNPs were recovered. Three genetic groups were identified, with both marker types distributed in different oceanic regions: Pacific‐1 in central Pacific, Pacific‐2 in eastern Pacific and Atlantic in western Atlantic. Nonetheless, the analysis of SNP identified a fourth population in the Pacific coast of Baja California Sur, Mexico (Pacific‐3), whereas that of mtDNA did not. This mito‐nuclear discordance is likely explained by a recently diverged Pacific‐3 population. In addition, two mtDNA haplogroups were found within the western Atlantic, likely indicating that the species came into the Atlantic from the Indian Ocean with historical gene flow from the eastern Pacific. Relative gene flow among ocean basins was low with rm < 0.2, whereas in the eastern Pacific it was asymmetric and higher from south to north (rm > 0.79). The results reflect the importance of assessing genetic structure and gene flow of natural populations for the purposes of sustainable management.

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Section: Introductionmentioning

confidence: 99%

Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management

Mendoza‐Portillo¹,

Galván‐Tirado

Portnoy

et al. 2020

Journal of Fish Biology

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“…In addition to the 464 microsatellite markers derived from the genomic library Ohara et al developed [2,3], 837 markers in total were included in the yellowtail genetic linkage maps (Additional file 1). No segregation distortion was observed in any markers and hence lethal allele-linked markers were not included in our marker set.…”

Section: Resultsmentioning

confidence: 99%

“…The microsatellites containing CA/GT repeat motifs were isolated according to the protocol of Ohara et al and primers were designed as described above [2,3]. …”

Section: Methodsmentioning

confidence: 99%

Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata

et al. 2014

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BackgroundJapanese amberjack/yellowtail (Seriola quinqueradiata) is a commonly cultured marine fish in Japan. For cost effective fish production, a breeding program that increases commercially important traits is one of the major solutions. In selective breeding, information of genetic markers is useful and sufficient to identify individuals carrying advantageous traits but if the aim is to determine the genetic basis of the trait, large insert genomic DNA libraries are essential. In this study, toward prospective understanding of genetic basis of several economically important traits, we constructed a high-coverage bacterial artificial chromosome (BAC) library, obtained sequences from the BAC-end, and constructed comprehensive female and male linkage maps of yellowtail using Simple Sequence Repeat (SSR) markers developed from the BAC-end sequences and a yellowtail genomic library.ResultsThe total insert length of the BAC library we constructed here was estimated to be approximately 11 Gb and hence 16-times larger than the yellowtail genome. Sequencing of the BAC-ends showed a low fraction of repetitive sequences comparable to that in Tetraodon and fugu. A total of 837 SSR markers developed here were distributed among 24 linkage groups spanning 1,026.70 and 1,057.83 cM with an average interval of 4.96 and 4.32 cM in female and male map respectively without any segregation distortion. Oxford grids suggested conserved synteny between yellowtail and stickleback.ConclusionsIn addition to characteristics of yellowtail genome such as low repetitive sequences and conserved synteny with stickleback, our genomic and genetic resources constructed and revealed here will be powerful tools for the yellowtail breeding program and also for studies regarding the genetic basis of traits.

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“…) and four published markers (Sequ38 from Ohara et al . ; Sdu21 from Renshaw et al . , and Sdu32 and Sdu46 from Renshaw et al .…”

Section: Methodsmentioning

confidence: 99%

Quantitative genetic properties of four measures of deformity in yellowtail kingfish Seriola lalandi Valenciennes, 1833

Nguyen

Whatmore

Miller³

et al. 2015

Journal of Fish Diseases

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The main aim of this study was to estimate the heritability for four measures of deformity and their genetic associations with growth (body weight and length), carcass (fillet weight and yield) and flesh-quality (fillet fat content) traits in yellowtail kingfish Seriola lalandi. The observed major deformities included lower jaw, nasal erosion, deformed operculum and skinny fish on 480 individuals from 22 families at Clean Seas Tuna Ltd. They were typically recorded as binary traits (presence or absence) and were analysed separately by both threshold generalized models and standard animal mixed models. Consistency of the models was evaluated by calculating simple Pearson correlation of breeding values of full-sib families for jaw deformity. Genetic and phenotypic correlations among traits were estimated using a multitrait linear mixed model in ASReml. Both threshold and linear mixed model analysis showed that there is additive genetic variation in the four measures of deformity, with the estimates of heritability obtained from the former (threshold) models on liability scale ranging from 0.14 to 0.66 (SE 0.32-0.56) and from the latter (linear animal and sire) models on original (observed) scale, 0.01-0.23 (SE 0.03-0.16). When the estimates on the underlying liability were transformed to the observed scale (0, 1), they were generally consistent between threshold and linear mixed models. Phenotypic correlations among deformity traits were weak (close to zero). The genetic correlations among deformity traits were not significantly different from zero. Body weight and fillet carcass showed significant positive genetic correlations with jaw deformity (0.75 and 0.95, respectively). Genetic correlation between body weight and operculum was negative (-0.51, P < 0.05). The genetic correlations' estimates of body and carcass traits with other deformity were not significant due to their relatively high standard errors. Our results showed that there are prospects for genetic selection to improve deformity in yellowtail kingfish and that measures of deformity should be included in the recording scheme, breeding objectives and selection index in practical selective breeding programmes due to the antagonistic genetic correlations of deformed jaws with body and carcass performance.

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Isolation and characterization of microsatellite loci from yellowtail Seriola quinqueradiata and cross‐species amplification within the genus Seriola

Cited by 13 publications

References 1 publication

Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management

Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management

Construction of a high-coverage bacterial artificial chromosome library and comprehensive genetic linkage map of yellowtail Seriola quinqueradiata

Quantitative genetic properties of four measures of deformity in yellowtail kingfish Seriola lalandi Valenciennes, 1833

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