The lineage leading to lungfishes is one of the few major jawed vertebrate groups in which Ig heavy chain isotype structure has not been investigated at the genetic level. In this study, we have characterized three different Ig heavy chain isotypes of the African lungfish, Protopterus aethiopicus, including an IgM-type heavy chain and short and long forms of non-IgM heavy chains. Northern blot analysis as well as patterns of VH utilization suggest that the IgM and non-IgM isotypes are likely encoded in separate loci. The two non-IgM isotypes identified in Protopterus share structural features with the short and long forms of IgX͞W͞NARC (referred to hereafter as IgW), which were previously considered to be restricted to the cartilaginous fish. It seems that the IgW isotype has a far broader phylogenetic distribution than considered originally and raises questions with regard to the origin and evolutionary divergence of IgM and IgW. Moreover, its absence in other gnathostome lineages implies paradoxically that the IgW-type genes were lost from teleost and tetrapod lineages. T etrapods (land vertebrates) are thought to have shared a common ancestor with a group of fleshy-finned fishes that include the Crossopterygii (coelacanths) and the Dipneusti (lungfishes) (1, 2). Recent systematic studies using both morphological and molecular characters generally have supported a phylogeny in which the lungfishes are the closest relatives of the tetrapods (3-5). Comparative studies on the immunoglobulins at the molecular genetic level have focused on numerous ectothermic vertebrate groups, including chondrichthyans (sharks, rays, chimeras), teleosts (bony fishes), amphibians, and reptilians (reviewed in refs. 6 and 7), but little corresponding information is available for the fleshy-finned fish lineage. Three Ig isotypes have been identified so far at the protein level in two species of lungfishes (8-10) that were generically designated: high molecular weight (IgM), intermediate molecular weight, and low molecular weight (IgN) (9, 10). We report herein the cloning and characterization of several Ig heavy chain (IgH) cDNAs from Protopterus aethiopicus and present evidence for a phylogenetic relationship between these different isoforms and genes that have been identified in cartilaginous fishes, thus placing the divergence of IgH isotypes at a far earlier point in vertebrate phylogeny than considered previously.
Materials and MethodsJuvenile P. aethiopicus specimens (10-20 cm) were maintained in laboratory aquaria before death, and removal of tissues. RNA, and DNA were isolated by using standard protocols (11). Liver RNA was used as the source for cDNA library construction, whereas erythrocyte DNA was used for genomic library construction.Generation of VH Probes. V H -specific probes were derived by amplifying Protopterus genomic DNA with primers that complement sequences in FR1 to FR3 that are common to vertebrate Ig V H structures (12). Appropriately sized PCR products were subcloned into pBluescript SKIIϩ and sequenced. A p...