The plural religious phenomenon has shown the goodness perspective and the diversity universally and inclusively. The emergence of this thought, obviously, will replace products of religious doctrines for the people who believe that the truest religion is a specific religion embraced by specific people while the others are false. The research was conducted in Manado, North Sulawesi of Indonesia where minority Muslim exists. In the context of multireligious society, Islamic education taught in schools is required to embed values of religious tolerance. This paper discusses the embedding process of the values of religious tolerance within Islamic lesson in senior high school of Manado. The learning processes allow students chances to practice their religious lessons appropriately with their respective religions. In addition, they have the opportunity in creating learning atmosphere with religious diversity, building mutual trust among them, keeping mutual understanding each other, upholding mutual love, going deep into materials about tolerance and guiding and giving motivation to the students in doing activities relating to tolerance as by not differentiate Muslim and non-Muslim students.