Pasteurella multocida is the causative agent of a wide range of diseases in avian and mammalian hosts. Gene expression in response to low iron conditions was analyzed in P. multocida using whole-genome microarrays. The analysis shows that the expression of genes involved in energy metabolism and electron transport generally decreased 2.1-to 6-fold while that of genes used for iron binding and transport increased 2.1-to 7.7-fold in P. multocida during the first 2 h of growth under iron-limiting conditions compared with controls. Notably, 27% of the genes with significantly altered expression had no known function, illustrating the limitations of using publicly available databases to identify genes involved in microbial metabolism and pathogenesis. Taken together, the results of our investigations demonstrate the utility of whole-genome microarray analyses for the identification of genes with altered expression profiles during varying growth conditions and provide a framework for the detailed analysis of the molecular mechanisms of iron acquisition and metabolism in P. multocida and other gram-negative bacteria.Pasteurella multocida is a gram-negative, nonmotile, rodshaped, facultative anaerobe that has been isolated from a wide range of mammals and birds throughout the world. This organism is the etiologic agent of a variety of economically significant diseases, including fowl cholera in poultry, hemorrhagic septicemia in cattle and buffalo, atrophic rhinitis in swine, and snuffles in rabbits (9, 12). The global distribution, severity of disease caused, and the wide variety of livestock affected by P. multocida account for considerable economic losses due to this pathogen worldwide (12).Iron is an essential nutrient for most organisms due to its important role in metabolic electron transport chains. Due to the presence of specialized protein carriers such as transferrin and lactoferrin in body fluids, the concentration of free iron normally present in mammalian and avian hosts is not enough to support the in vivo growth of bacteria (1, 2). Successful pathogens must therefore possess an effective response to the limited iron conditions encountered upon entry into a host. Previous studies illustrate the fact that the identities of genes and pathways involved in the acquisition, transport, and utilization of iron in P. multocida are poorly understood (5,6,10,11,13,16). Here we have utilized whole-genome microarray analysis to identify genes with altered expression patterns when P. multocida is grown under iron-limiting conditions. Bacterial growth and RNA isolation. P. multocida PM70 was grown to log phase in a flask of brain-heart infusion (BHI) medium (Becton Dickinson) at 37°C. The culture was split into two 180-ml volumes, briefly centrifuged at 4°C, washed with 1ϫ phosphate-buffered saline (pH 7.0), and centrifuged again. One pellet was resuspended in 180 ml of BHI medium, and the other was resuspended in 180 ml of BHI medium containing the iron chelator 2,2Ј-dipyridyl (200 M) (Sigma, St. Louis, Mo.). The resus...