2008
DOI: 10.1002/jcc.21158
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Investigations of an OH · · · S hydrogen bond via Car‐Parrinello and path integral molecular dynamics

Abstract: The presence of intramolecular hydrogen bonds influences the binding energy, tautomeric equilibrium, and spectroscopic properties of various classes of organic molecules. This article discusses the O-H...S bridge, one of the less commonly investigated types of intramolecular interactions. 3-mercapto-1,3-diphenylprop-2-en-1-one was considered as the model structure. This compound exhibits photochromic properties. Car-Parrinello molecular dynamics (CPMD) was applied to investigate the spectroscopic and molecular… Show more

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Cited by 14 publications
(9 citation statements)
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References 78 publications
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“…O–H···S hydrogen bonds are less investigated compared to O–H···O or N–H···N interactions, however they are frequent in proteins [67] and can also be strong and important in some circumstances. Parameter-free techniques such as ab initio force field MD are well suited for the task of investigating such hydrogen bonds, which we have shown in our recent study on the properties of O–H···S bridge [68]. When constructing the model, we have omitted the rest of the protein, including the hydrophobic cage formed by tryptophan residues.…”
Section: Resultsmentioning
confidence: 99%
“…O–H···S hydrogen bonds are less investigated compared to O–H···O or N–H···N interactions, however they are frequent in proteins [67] and can also be strong and important in some circumstances. Parameter-free techniques such as ab initio force field MD are well suited for the task of investigating such hydrogen bonds, which we have shown in our recent study on the properties of O–H···S bridge [68]. When constructing the model, we have omitted the rest of the protein, including the hydrophobic cage formed by tryptophan residues.…”
Section: Resultsmentioning
confidence: 99%
“…Particularly for GIPAW calculations, it is still challenging to include the effect of temperature, but initial results are being presented . A recent approach uses the combination of molecular dynamics and path integer approach to treat the system in terms of quantum mechanics, but it is still computationally expensive and not fully available in routine jobs.…”
Section: Discussionmentioning
confidence: 99%
“…More details about the second approach are given below or in Refs. [ 61 , 62 ]. Basically, the snapshots extracted and processed in the section on the a posteriori quantization were used (22 snapshots from each calculation type).…”
Section: Computational Methods and Proceduresmentioning
confidence: 99%