We report the photoionization of ion beam desorbed amino acids using femtosecond laser pulses at 195 and
260 nm. Ionization of ion-desorbed glycine, alanine, valine, leucine, isoleucine, and phenylalanine using 195
nm laser pulses is found to produce almost exclusively a decarboxylated ion fragment, while tyrosine and
tryptophan produce a functional group cation. The adiabatic ionization potentials for the former amino acids
correspond to the removal of an electron from the amine nitrogen atom, while for tyrosine and tryptophan it
corresponds to the removal of an electron from the aromatic functional group. We find that fragmentation is
initiated by the formation of a radical site which leads to an α-cleavage reaction and, depending upon which
electron is removed, results in the formation of a decarboxylated ion or a functional group ion. These results
indicate that a significant fraction of the amino acids are desorbed intact, but are fragmented when ionized.
Except for leucine, isoleucine, and phenylalanine, the mass spectra produced by 260 nm irradiation are similar
to the mass spectra produced by 195 nm irradiation. When using these two wavelengths, the desorbed amino
acids exhibit a 2- to 8-fold higher ion yield than is found using only secondary ions produced directly by the
incident ion beam. Tyrosine exhibits up to a 40-fold increase in signal using 195 nm irradiation.