Mantle cell lymphoma (MCL) is biologically and clinically heterogeneous and would benefit from prognostic biomarkers to guide management. Circulating tumor DNA (ctDNA) is a novel prognostic biomarker in diffuse large B-cell lymphoma that may have applicability in MCL. We analyzed ctDNA dynamics in previously untreated MCL patients who received induction therapy with bortezomib and DA-EPOCH-R for 6 cycles followed by randomization to observation or bortezomib maintenance in responding patients in a prospective phase 2 study. Most patients also underwent an initial treatment window of bortezomib alone prior to induction. Serum was collected pretreatment, after the window, after cycles 1 and 2, at the end of induction, and at each follow-up visit along with restaging CT scans. Next-generation sequencing was employed to identify and quantify ctDNA encoding the immunoglobulin receptor sequences in serum as markers of minimal residual disease. Fifty-three patients were enrolled with a median follow-up of 12.7 years. Patients without detectable ctDNA after 2 cycles of induction had longer progression-free survival (PFS) and overall survival (OS) compared to those with detectable ctDNA; median 2.7 versus 1.8 years (overall p=0.005) and median 13.8 years versus 7.4 years (overall p=0.03), respectively. Notably, in vivo assessment of ctDNA dynamics during the bortezomib window was not prognostic and there was no difference in PFS or OS with bortezomib maintenance. Monitoring ctDNA after induction showed that molecular relapse can precede clinical relapse in some cases. In conclusion, interim ctDNA negativity strongly correlates with improved survival and supports the investigation of response-adapted strategies. This trial was registered at www.clinicaltrials.gov #NCT00114738.