Plant RNases T2 are involved in several physiological and developmental
processes, including inorganic phosphate starvation, senescence, wounding,
defense against pathogens, and the self-incompatibility system. Solanaceae
RNases form three main clades, one composed exclusively of S-RNases and two that
include S-like RNases. We identified several positively selected amino acids
located in highly flexible regions of these molecules, mainly close to the B1
and B2 substrate-binding sites in S-like RNases and the hypervariable regions of
S-RNases. These differences between S- and S-like RNases in the flexibility of
amino acids in substrate-binding regions are essential to understand the
RNA-binding process. For example, in the S-like RNase NT, two positively
selected amino acid residues (Tyr156 and Asn134) are located at the most
flexible sites on the molecular surface. RNase NT is induced in response to
tobacco mosaic virus infection; these sites may thus be regions of interaction
with pathogen proteins or viral RNA. Differential selective pressures acting on
plant ribonucleases have increased amino acid variability and, consequently,
structural differences within and among S-like RNases and S-RNases that seem to
be essential for these proteins play different functions.