“…Additionally, the probes often need to be adapted to regional HIV variants to limit indeterminate reactions by OLA. Previous studies have reported rates of indeterminate reactions between 5.5% and 7% (Chi, Ellis, Chintu, Cantrell, Sinkala, Aldrovandi, Warrier, Mbewe, Nakamura, Stringer, Frenkel, Stringer, 2009; Ellis, Page, Burman, Buskin, Frenkel, 2009). Importantly, when the MPX-OLA queries codons conferring resistance to the same ARV, such as the 103/181 pair, detection of a mutant at either codon provides clinically relevant drug-resistance information.…”