The intramolecular distribution of nitrogen isotopes in N 2 O is an emerging tool for defining the relative importance of microbial sources of this greenhouse gas. The application of intramolecular isotopic distributions to evaluate the origins of N 2 O, however, requires a foundation in laboratory experiments in which individual production pathways can be isolated. Here we evaluate the site preferences of N 2 O produced during hydroxylamine oxidation by ammonia oxidizers and by a methanotroph, ammonia oxidation by a nitrifier, nitrite reduction during nitrifier denitrification, and nitrate and nitrite reduction by denitrifiers. The site preferences produced during hydroxylamine oxidation were 33.5 ؎ 1.2‰, 32.5 ؎ 0.6‰, and 35.6 ؎ 1.4‰ for Nitrosomonas europaea, Nitrosospira multiformis, and Methylosinus trichosporium, respectively, indicating similar site preferences for methane and ammonia oxidizers. The site preference of N 2 O from ammonia oxidation by N. europaea (31.4 ؎ 4.2‰) was similar to that produced during hydroxylamine oxidation (33.5 ؎ 1.2‰) and distinct from that produced during nitrifier denitrification by N. multiformis (0.1 ؎ 1.7‰), indicating that isotopomers differentiate between nitrification and nitrifier denitrification. The site preferences of N 2 O produced during nitrite reduction by the denitrifiers Pseudomonas chlororaphis and Pseudomonas aureofaciens (؊0.6 ؎ 1.9‰ and ؊0.5 ؎ 1.9‰, respectively) were similar to those during nitrate reduction (؊0.5 ؎ 1.9‰ and ؊0.5 ؎ 0.6‰, respectively), indicating no influence of either substrate on site preference. Site preferences of ϳ33‰ and ϳ0‰ are characteristic of nitrification and denitrification, respectively, and provide a basis to quantitatively apportion N 2 O.Over the past several decades, anthropogenic activity, primarily agriculture, has doubled the annual input of biologically reactive nitrogen into the environment (14). This surplus of reactive nitrogen has stimulated natural microbial activity, the largest source of the greenhouse gas nitrous oxide (N 2 O) (17, 26). Ammonia-and methane-oxidizing organisms produce N 2 O during the oxidation of hydroxylamine (NH 2 OH) to nitrite (NO 2 Ϫ ). Ammonia-oxidizing bacteria also reduce NO 2 Ϫ to N 2 O and N 2 under anoxic conditions by a process termed nitrifier denitrification (12,22,23). Nitrous oxide can also be produced and consumed by heterotrophic denitrifying organisms. In this case, N 2 O is produced and consumed by the stepwise reduction of nitrate (NO 3 Ϫ ) to N 2 (33). The relative importance of nitrification and denitrification in N 2 O production has proven difficult to determine. Previous attempts to differentiate nitrification-and denitrification-mediated N 2 O production in soils using stable isotope approaches (4, 20, 30, 31, 32) relied on the observation that the fractionation factor associated with N 2 O production by denitrifiers (2) is substantially less than that associated with nitrification (34). The assumption was that N 2 O with a high ␦ 15 N value is indicative of denitri...