Double-knotted
peptides identified in venoms and synthetic bivalent
peptide constructs targeting ion channels are emerging tools for the
study of ion channel pharmacology and physiology. These highly complex
and disulfide-rich peptides contain two individual cystine knots,
each comprising six cysteines and three disulfide bonds. Until now,
native double-knotted peptides, such as Hi1a and DkTx, have only been
isolated from venom or produced recombinantly, whereas engineered
double-knotted peptides have successfully been produced through enzymatic
ligation using sortase A to form a seamless amide bond at the ligation
site between two knotted toxins, and by alkyne/azide click chemistry,
joining two peptide knots via a triazole linkage. To further pursue
these double-knotted peptides as pharmacological tools or probes for
therapeutically relevant ion channels, we sought to identify a robust
methodology resulting in a high yield product that lends itself to
rapid production and facile mutational studies. In this study, we
evaluated the ligation efficiency of enzymatic (sortase A5°,
butelase 1, wild-type OaAEP 1, C247A-OaAEP 1, and peptiligase) and
mild chemical approaches (α-ketoacid-hydroxylamine, KAHA) for
forming a native amide bond linking the toxins while maintaining the
native disulfide connectivity of each pre-folded peptide. We used
two NaV1.7 inhibitors: PaurTx3, a spider-derived gating
modifier peptide, and KIIIA, a small cone snail-derived pore blocker
peptide, which have previously been shown to increase affinity and
inhibitory potency on hNaV1.7 when ligated together. Correctly
folded peptides were successfully ligated in varying yields, without
disulfide bond shuffling or reduction, with sortase A5° being
the most efficient, resulting in 60% ligation conversion within 15
min. In addition, electrophysiology studies demonstrated that for
these two peptides, the amino acid composition of the linker did not
affect the activity of the double-knotted peptides. This study demonstrates
the powerful application of enzymes in efficiently ligating complex
disulfide-rich peptides, paving the way for facile production of double-knotted
peptides.