By using matrix-assisted laser desorption͞ ionization time-of-f light MS, individual peptidergic neurons from Aplysia are assayed. A semiquantitative method is developed for comparing single-cell profiles by using spectral normalization, and peptides are localized to specific cells by mass spectrometric cell mapping. In addition to all previously identified products of the egg-laying hormone (ELH) gene, other peptides are formed from proteolytic hydrolysis of Leu-Leu residues within ELH and acidic peptide (AP). AP exhibits further processing to yield AP 1-20 and AP 9 -27 . These peptides appear to be colocalized in vesicles with ELH, transported to specific neuronal targets, and released in a Ca 2؉ -dependent manner. A differential peptide distribution is observed at a specific target cell, and a low-frequency variation of AP, [Thr 21 ]AP, is detected in a single animal.