Corynebacterium matruchotii has been the subject of numerous dental pathogenesis studies. The purpose of the present study was to resolve concerns about diversity within the reference strains of C. matruchotii through analysis of seven strains procured from the American Type Culture Collection (ATCC). Analysis of whole-cell fatty acid profiles with the library generation software of Microbial ID Inc. revealed that three types of organisms have been deposited in the ATCC as C. matruchotii. These three groups of organisms were also distinguishable by DNA-DNA dot blot hybridization, by sequences of two hypervariable regions of the 16S rRNA gene, and by the pyrrolidonyl arylamidase test. These studies indicate that two C. matruchotii reference strains, ATCC 33449 and ATCC 33822, are members of the recently proposed species, Corynebacterium durum. The colonial morphology and biochemical reactions of the C. durum strains are more diverse than originally reported. Strain ATCC 43833 is unique and represents a novel species. In addition to the type strain, ATCC 14266, true members of the species C. matruchotii include ATCC strains 14265, 33806, and 43832 plus two reference strains, L2 and Richardson 13, which comprise the vast majority of strains used in dental pathogenesis research with this species.The seminal paper by Gilmour et al. (13) provided an accurate description of Bacterionema matruchotii and clearly distinguished it from members of the genus Leptotrichia and from other organisms with which it had been confused, including Cladothrix matruchotii, Leptothrix buccalis, Leptotrichia buccalis, and Leptotrichia dentium. Based on chemotaxonomic characteristics, Bacterionema matruchotii was assigned to the genus Corynebacterium by Collins et al. in 1982 (5).When this laboratory evaluated the API Rapid CORYNE identification system (Biomérieux Vitek, Inc., Hazelwood, Mo.), it was discovered that reactions of Corynebacterium matruchotii had been omitted from its database (12). Since the database included most other recognized Corynebacterium species of human origin, we suspected that the developers had encountered some unresolvable discrepancies with representative strains of this species. To explore this possibility, we purchased all strains of C. matruchotii available at the American Type Culture Collection (ATCC). Because a large body of work has been published on the possible role of C. matruchotii in the pathogenesis of dental plaque, caries, and periodontitis, we also included two additional strains of C. matruchotii that were used in many of these studies, namely strain L2 and Richardson's strain 13 (22, 23).The present study was designed to examine the taxonomic relatedness of commercially available and other reference strains of C. matruchotii. The question was addressed on the basis of whole-cell fatty acid analyses, DNA-DNA dot blot hybridizations, sequencing of two hypervariable regions of the 16S rRNA gene, and biochemical reactions. The results indicate that the seven ATCC strains deposited as C. matruchot...