Biocompatible reactions
are powerful tools to probe protein functions
in their native environment. Due to the difficulty of penetrating
the live-cell membrane and the complex intracellular environment,
the biocompatible reactions inside live cells are challenging, especially
at the subcellular level with spatial resolution. Here we report the
first biocompatible photocatalytic azide conjugation reaction inside
live cells to achieve the mitochondria-selective proteins labeling.
The organic dyes acridine orange, fluorescein, and rhodamine 123 were
developed as the biocompatible photocatalysts for the proteins labeling
with aryl azides, which yielded benzazirines and ketenimines from
triplet nitrenes for the protein nucleophilic residue trapping. The
photocatalytic azide conjugation reaction with rhodamine 123 selectively
labeled the mitochondrial proteins via the organic dye’s mitochondrial
localization. In response to the mitochondrial stress induced by rotenone,
this photocatalytic azide-promoted labeling method mapped the dynamic
mitochondrial proteome changes with high temporal-spatial precision
and identified several potential mitochondrial stress-response proteins
for the first time. The high temporal-spatial precision of this photocatalytic
azide-promoted labeling method holds excellent potential for intracellular
protein network investigations.