Interrelations of chemistry and biotechnology-VI. Microbial production of commodity chemicals (Technical Report)

Nagasawa, Tomoko; Yamada, Hideaki

doi:10.1351/pac199567071241

Cited by 44 publications

(6 citation statements)

References 20 publications

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“…Enzyme based processes for production of fine chemicals are rapidly gaining practical significance owing to more economical high purity products in an eco-environmentally acceptable manner (Nagasawa and Yamada 1995). Enzymes are preferred in industrial chemical synthesis over conventional methods for their high selectivity, i.e., chiral, positional and functional group specific (Schmid et al 2001).…”

Section: The Use Of Enzymes In Industrial Processesmentioning

confidence: 99%

Microbial enzymes: industrial progress in 21st century

et al. 2016

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Biocatalytic potential of microorganisms have been employed for centuries to produce bread, wine, vinegar and other common products without understanding the biochemical basis of their ingredients. Microbial enzymes have gained interest for their widespread uses in industries and medicine owing to their stability, catalytic activity, and ease of production and optimization than plant and animal enzymes. The use of enzymes in various industries (e.g., food, agriculture, chemicals, and pharmaceuticals) is increasing rapidly due to reduced processing time, low energy input, cost effectiveness, nontoxic and eco-friendly characteristics. Microbial enzymes are capable of degrading toxic chemical compounds of industrial and domestic wastes (phenolic compounds, nitriles, amines etc.) either via degradation or conversion. Here in this review, we highlight and discuss current technical and scientific involvement of microorganisms in enzyme production and their present status in worldwide enzyme market.Graphical abstract

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Section: The Use Of Enzymes In Industrial Processesmentioning

confidence: 99%

Microbial enzymes: industrial progress in 21st century

et al. 2016

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“…1,2 NHases have attracted substantial interest as biocatalysts in preparative organic chemistry and are used in the large scale industrial production of acrylamide 1,[3][4][5][6] and nicotinamide. 7 X-ray crystallographic studies indicate that they are α2β2 heterotetramers with an active site consisting of three cysteine residues, two amide nitrogens, a water molecule, and either a nonheme Fe(III) ion (Fetype) or a noncorrin Co(III) ion (Co-type).…”

Section: Introductionmentioning

confidence: 99%

The iron-type nitrile hydratase activator protein is a GTPase

Gumataotao

Lankathilaka

Bennett

et al. 2017

Biochemical Journal

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Abstract:The Fe-type nitrile hydratase activator protein from Rhodococcus equi TG328-2 (ReNHase TG328-2) was successfully expressed and purified. Sequence analysis and homology modeling suggest that it is a G3E P-loop guanosine triphosphatase (GTPase) within the COG0523 subfamily. Kinetic studies revealed that the Fe-type activator protein is capable of hydrolyzing NOT THE PUBLISHED VERSION; this is the author's final, peer-reviewed manuscript. The published version may be accessed by following the link in the citation at the bottom of the page.Biochemical Journal, Vol 474, No. 2 (January 15, 2017): pg. 247-258. DOI. This article is © Portland Press Limited and permission has been granted for this version to appear in e-Publications@Marquette. Portland Press Limited does not grant permission for this article to be further copied/distributed or hosted elsewhere without the express permission from Portland Press Limited. 2GTP to GDP with a kcat value of 1.2 × 10 −3 s −1 and a Km value of 40 μM in the presence of 5 mM MgCl2 in 50 mM 4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid at a pH of 8.0. The addition of divalent metal ions, such as Co(II), which binds to the ReNHase TG328-2 activator protein with a Kd of 2.9 μM, accelerated the rate of GTP hydrolysis, suggesting that GTP hydrolysis is potentially connected to the proposed metal chaperone function of the ReNHase TG328-2 activator protein. Circular dichroism data reveal a significant conformational change upon the addition of GTP, which may be linked to the interconnectivity of the cofactor binding sites, resulting in an activator protein that can be recognized and can bind to the NHase α-subunit. A combination of these data establishes, for the first time, that the ReNHase TG328-2 activator protein falls into the COG0523 subfamily of G3E P-loop GTPases, many of which play a role in metal homeostasis processes.

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“…Nitrile hydratase (NHase 2 ; EC 4.2.1.84), one of the enzymes in the nitrile degradation pathway, catalyzes the hydrolysis of nitriles to their corresponding higher value amides in a chemo-, regio-, and/or enatioselective manner at ambient pressures and temperatures at physiological pH (Scheme 1) (1)(2)(3)(4)(5)(6). NHases have attracted substantial interest as biocatalysts for industrial applications such as the large-scale production of acrylamide (3,(7)(8)(9) and nicotinamide (10).…”

mentioning

confidence: 99%

“…NHases have attracted substantial interest as biocatalysts for industrial applications such as the large-scale production of acrylamide (3,(7)(8)(9) and nicotinamide (10). Acrylamide production utilizing the bacterium Rhodococcus rhodochrous J1 has increased to Ͼ30,000 tons/year (3), whereas Ͼ3500 tons of nicotinamide are produced per year (11).…”

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confidence: 99%

Unraveling the Catalytic Mechanism of Nitrile Hydratases

Mitra

Holz

2007

Journal of Biological Chemistry

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To elucidate a detailed catalytic mechanism for nitrile hydratases (NHases), the pH and temperature dependence of the kinetic constants k cat and K m for the cobalt-type NHase from Pseudonocardia thermophila JCM 3095 (PtNHase) were examined. PtNHase was found to exhibit a bell-shaped curve for plots of relative activity versus pH at pH 3.2-11 and was found to display maximal activity between pH 7.2 and 7.8. Fits of these data provided pK ES1 and pK ES2 values of 5.9 ؎ 0.1 and 9.2 ؎ 0.1 (k cat ‫؍‬ 130 ؎ 1 s ؊1 ), respectively, and pK E1 and pK E2 values of 5.8 ؎ 0.1 and 9.1 ؎ 0.1 (k cat /K m ‫؍‬ (6.5 ؎ 0.1) ؋ 10 3 s ؊1 mM ؊1 ), respectively. Proton inventory studies indicated that two protons are transferred in the rate-limiting step of the reaction at pH 7.6. Because PtNHase is stable at 60°C, an Arrhenius plot was constructed by plotting ln(k cat ) versus 1/T, providing E a ‫؍‬ 23.0 ؎ 1.2 kJ/mol. The thermal stability of PtNHase also allowed ⌬H 0 ionization values to be determined, thus helping to identify the ionizing groups exhibiting the pK ES1 and pK ES2 values. Based on ⌬H ion 0 data, pK ES1 is assigned to ␤Tyr 68 , whereas pK ES2 is assigned to ␤Arg 52 , ␤Arg 157 , or ␣Ser 112 (NHases are ␣ 2 ␤ 2 -heterotetramers). A combination of these data with those previously reported for NHases and synthetic model complexes, along with sequence comparisons of both iron-and cobalt-type NHases, allowed a novel catalytic mechanism for NHases to be proposed.Nitrile hydratase (NHase 2 ; EC 4.2.1.84), one of the enzymes in the nitrile degradation pathway, catalyzes the hydrolysis of nitriles to their corresponding higher value amides in a chemo-, regio-, and/or enatioselective manner at ambient pressures and temperatures at physiological pH (Scheme 1) (1-6). NHases have attracted substantial interest as biocatalysts for industrial applications such as the large-scale production of acrylamide (3, 7-9) and nicotinamide (10). Acrylamide production utilizing the bacterium Rhodococcus rhodochrous J1 has increased to Ͼ30,000 tons/year (3), whereas Ͼ3500 tons of nicotinamide are produced per year (11). Yields of Ͼ99% are achieved, and the formation of by-products such as acrylic acid, which plagues traditional methodology, is completely avoided. However, one of the most attractive features of nitrile-metabolizing enzymes is their ability to selectively hydrolyze one cyano group of a dinitrile to its corresponding amine, something that is virtually impossible using conventional chemical methods (12-14). Therefore, the potential use of nitrile-hydrolyzing enzymes for the production of several fine chemicals is increasingly recognized.NHases are metalloenzymes that contain either a non-heme Fe(III) ion (iron-type) or a non-corrin Co(III) ion (cobalt-type) in their active site and are typically ␣ 2 ␤ 2 -heterotetramers (5, 6, 15, 16). In all known NHases, each ␣-subunit has a highly homologous amino acid sequence (CXYCSCX) that forms the metal-binding site. Cobalt-type NHases contain threonine and tyrosine in the -C(T/S)YCSC(Y/T)-se...

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Interrelations of chemistry and biotechnology-VI. Microbial production of commodity chemicals (Technical Report)

Abstract: Abstract

Cited by 44 publications

References 20 publications

Microbial enzymes: industrial progress in 21st century

Microbial enzymes: industrial progress in 21st century

The iron-type nitrile hydratase activator protein is a GTPase

Unraveling the Catalytic Mechanism of Nitrile Hydratases

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