Internet Applications for Computational Biology, the CMISS Web Browser Extension and and Use in Education

Stevens, Carey; Blackett, Shane; LeGrice, Ian J.; Hunter, Peter

doi:10.1109/iembs.2005.1616548

Cited by 2 publications

(2 citation statements)

References 3 publications

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“…Finally, the model preview offers a static graphical view of the model. For models uploaded in exFormat or VTK format, the preview also links to the URL that allows a threedimensional interactive visualization within a FIREFOX browser provided with the ZINC plugin (Stevens et al 2005).…”

Section: (A) Characteristicsmentioning

confidence: 99%

“…The model visualization link for the three-dimensional interactive visualization is available below, if the model has been uploaded in exFormat or VTK format. The visualization operates using the FIREFOX plugin ZINC (Stevens et al 2005), which encapsulates the CMGUI rendering engine previously mentioned. The list of the cellular models in CellML format is included, if any of these models has been embedded within the geometry.…”

Section: (A) Characteristicsmentioning

confidence: 99%

See 1 more Smart Citation

Sharing and reusing cardiovascular anatomical models over the Web: a step towards the implementation of the virtual physiological human project

Gianni

McKeever

et al. 2010

Phil. Trans. R. Soc. A.

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Sharing and reusing anatomical models over the Web offers a significant opportunity to progress the investigation of cardiovascular diseases. However, the current sharing methodology suffers from the limitations of static model delivery (i.e. embedding static links to the models within Web pages) and of a disaggregated view of the model metadata produced by publications and cardiac simulations in isolation. In the context of euHearta research project targeting the description and representation of cardiovascular models for disease diagnosis and treatment purposes-we aim to overcome the above limitations with the introduction of euHeartDB, a Web-enabled database for anatomical models of the heart. The database implements a dynamic sharing methodology by managing data access and by tracing all applications. In addition to this, euHeartDB establishes a knowledge link with the physiome model repository by linking geometries to CellML models embedded in the simulation of cardiac behaviour. Furthermore, euHeartDB uses the exFormat-a preliminary version of the interoperable FieldML data format-to effectively promote reuse of anatomical models, and currently incorporates Continuum Mechanics, Image Analysis, Signal Processing and System Identification Graphical User Interface (CMGUI), a rendering engine, to provide three-dimensional graphical views of the models populating the database. Currently, euHeartDB stores 11 cardiac geometries developed within the euHeart project consortium.

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Section: (A) Characteristicsmentioning

confidence: 99%

Section: (A) Characteristicsmentioning

confidence: 99%