It is considered that intestinal barrier dysfunction and systemic endotoxemia drive obesity and its related complications. However, what causes barrier dysfunction remains to be elucidated. Here, we showed that the gut microbiota from high-fat diet (HFD)-fed mice had impaired ability to degrade dietary flavonoids, and in correspondence, the microbial-derived flavonoid metabolite desaminotyrosine (DAT) was reduced. Supplementation of DAT in the drinking water was able to counter the HFD-induced body fat mass accumulation and body weight increment. This is correlated with the role of DAT in maintaining mucosal immune homeostasis to protect barrier integrity. DAT could attenuate dextran sodium sulfate (DSS)-induced mucosal inflammation in a type I interferon signal-dependent manner. Furthermore, intraperitoneal injection of DAT-protected mice from bacterial endotoxin-induced septic shock. Together, we identified DAT as a gut microbiota-derived anti-inflammatory metabolite that functions to modulate local and systemic immune homeostasis. Our data support the notion of dysbiosis being an important driving force of mucosal barrier dysfunction and systemic metabolic complications. K E Y W O R D S desaminotyrosine, flavonoids, microbial metabolite, mucosal barrier, type I IFN 1 | INTRODUCTION Defects in preserving the integrity of the intestinal mucosal barriers can result in systemic endotoxemia, which is considered to drive chronic low-grade systemic inflammation that leads to obesity and its related complications. 1-4 However, what causes the gut barrier dysfunction during obesity is poorly understood. A recent study suggests that hyperglycemia, which is often accompanied by obesity, drives intestinal barrier dysfunction, and increases the risk for enteric infection. 5 Whether hyperglycemia is the initial trigger to break the mucosal barrier during the development of obesity is currently unknown. 2 | WEI Et al.