Moraxella lacunata and Moraxella bovis use type 4 pili to adhere to epithelial tissues of the cornea and conjunctiva. Primer extension analyses were used to map the transcriptional start sites for the genes encoding the major pilin subunits (tfpQ/I) and the DNA invertase (piv), which determines pilin type expression. tfpQ/I transcription starts at a 54 -dependent promoter (tfpQ/Ip 2 ) and, under certain growth conditions, this transcription is accompanied by weaker upstream transcription that starts at a potential 70 -dependent promoter (tfpQ/Ip 1 ). piv is expressed in both M. lacunata and M. bovis from a putative 70 -dependent promoter (pivp) under all conditions assayed. 54 -dependent promoters require activators in order to initiate transcription; therefore, it is likely that tfpQ/Ip 2 is also regulated by an activator in Moraxella. Primer extension assays with RNA isolated from Escherichia coli containing the subcloned pilin inversion region from M. lacunata showed that pivp is used for the expression of piv; however, tfpQ/Ip 2 is not used for the transcription of tfpQ/I. Transcription from tfpQ/Ip 2 was activated in E. coli when the sensor (PilS) and response regulator (PilR) proteins of type 4 pilin transcription in Pseudomonas aeruginosa were expressed from a plasmid. These results suggest that the expression of the type 4 pilin in M. lacunata and M. bovis is regulated not only by a site-specific DNA inversion system but also by a regulatory system which is functionally analogous to the PilS-PilR two-component system of P. aeruginosa.Moraxella lacunata and Moraxella bovis are gram-negative human and bovine pathogens, respectively, that primarily infect the conjunctiva and cornea (3,15,29,32). Attachment to the epithelial tissues of these areas is mediated by type 4 pili (28). Other bacteria that express type 4 pili include Neisseria gonorrhoeae, Neisseria meningitidis, Pseudomonas aeruginosa, Vibrio cholerae, Aeromonas hydrophila, and Dichelobacter nodosus (10,13,23,25,37). In bacteria expressing type 4 pili, the major pilin subunit is expressed as a pre-pilin protein with an unusually short 6-amino-acid leader sequence followed by a predominantly hydrophobic domain (35). The hydrophobic domain and the leader sequence are required to deliver the protein to an ATP-dependent, Sec-independent secretory pathway (34). During the process of secretion, a pre-pilin peptidase cleaves the leader sequence and methylates the first amino acid of the mature protein, creating N-methylphenylalanine (36). Thus, type 4 pili have also been classified as MePhe pili.M. bovis exhibits antigenic and phase variations of its type 4 pili, alternately expressing Q-or I-type pili and switching between P ϩ (piliated) and P Ϫ (nonpiliated) at a frequency as high as 10 Ϫ4 per cell per generation (21). M. bovis cells expressing Q-type pili are more efficient at establishing infection than those expressing I-type pili (27, 29), and nonpiliated M. bovis cells cannot establish infection (15). Therefore, pili are important virulence factor...