The maize floury 2 (/72) mutation enhances the lysine content of the grain, but the soft texture of the endosperm makes it unsuitable for commercial production. The mutant phenotype is linked with the appearance of a 24-kDa a-zein protein and increased synthesis of binding protein, both of which are associated with irregularly shaped protein bodies. We have cloned the gene encoding the 24-kDa protein and show that it is expressed as a 22-kDa a-zein with an uncleaved signal peptide. Comparison of the deduced N-terminal amino acid sequence of the 24-kDa a-zein protein with other a-zeins revealed an alanine to valine substitution at the C-terminal position of the signal peptide, a histidine insertion within the seventh a-helical repeat, and an alanine to threonine substitution with the same a-helical repeat of the protein. Structural defects associated with this a-zein explain many of the phenotypic effects of the fl2 mutation.Between 50% and 60% of the protein in maize (Zea mays L.) kernels consists of a mixture of prolamin storage proteins known as zeins. These proteins are rich in proline and glutamine but lack lysine, making the seed nutritionally inferior for monogastric animals. The lysine deficiency of maize spurred extensive efforts to identify mutants with higher levels of this essential amino acid. Thirty years ago the opaque 2 (o2) and floury 2 (f72) mutants were shown to have elevated levels of lysine in the endosperm protein (1, 2). These observations generated a great deal of optimism regarding the potential development of high-lysine corn, but the soft, starchy endosperm of these mutants causes the kernels to be susceptible to mechanical damage and creates a higher susceptibility to insect and fungal damage. Consequently, neither mutant gained wide commercial application.Despite their phenotypic similarities, distinctive biochemical differences distinguish o2 andfl2 mutants. The o2 mutation is recessive, while the fl2 mutation is semidominant, with the severity of the phenotype correlated to the dosage of the mutant allele. Both mutants exhibit reduced zein accumulation in the endosperm, but the o2 mutation specifically affects the 22-kDa a-zeins (3), while the fl2 mutation equally affects synthesis of all classes of zeins (4, 5). Protein bodies in o2 and fl2 endosperm are smaller than normal, but fl2-encoded protein bodies are asymmetrical and misshapen compared to the spherical protein bodies of normal and o2 endosperm (6). The zein protein profile and the morphology of the protein bodies in o2ff2 double mutants more closely resemble those found in o2 alone, indicating that o2 is epistatic to fl2 (7,8).The 02 gene has been isolated and shown to encode a leucine zipper-type transcription factor that controls expression of the 22-kDa family of a-zein genes (9), but the basis of thefl2 defect is unknown.The fl2 mutation is associated with enhanced levels of binding protein (BiP), the 75-kDa endoplasmic reticulum (ER) molecular chaperone, that becomes localized near the periphery of ER-derived ...