MyoD, an essential transcription factor involved in muscle cell terminal differentiation, is regulated by acetylation, as are a number of other transcription factors, but the histone acetyltransferase enzyme responsible for this acetylation is a matter of controversy. In particular, contradictory findings have been reported concerning the ability of CBP/p300 to acetylate MyoD in vitro. Here we provide an explanation for this discrepancy: although full-length p300 does indeed acetylate MyoD, a fragment of p300 corresponding to its histone acetyltransferase domain does not. In addition to clearly demonstrating that p300 acetylates MyoD in vitro, these results underscore the necessity of using full-length histone acetyltransferase enzymes to draw valid conclusions from acetylation experiments.Acetylation has recently emerged as a central mode of regulation for proteins. Histone acetyltransferases (HATs), 1 which are able to acetylate histone and non-histone proteins, are involved in a variety of essential cellular processes such as muscle-cell terminal differentiation. Muscle-cell terminal differentiation involves several families of transcription factors, including myogenic basic helix-loop-helices (MyoD, Myf-5, myogenin, and MRF-4) (1), and transcriptional co-regulators with histone acetyltransferase activity, the PCAF/GCN5 family (2-4) and the CBP/p300 family (5, 6). PCAF (7) and CBP/p300 (8, 9) are found in the same complexes (7), although they acetylate distinct targets (10).HATs are involved at different steps of the differentiation program; differentiation triggers the acetylation of histones on muscle-specific promoters (11). In addition, the myogenic basic helix-loop-helix protein MyoD is also acetylated in myogenic cells (12). MyoD acetylation increases its transcriptional activity by influencing its ability to bind DNA (13) and to interact with other proteins (11). In vitro, MyoD is acetylated by PCAF (13). Acetylation of MyoD by CBP/p300, on the other hand, has been somewhat controversial. We reported that MyoD is acetylated by CBP or p300 with an efficiency similar to that observed with PCAF (12); in contrast, others have concluded from similar experiments that MyoD is acetylated by PCAF and not by p300 in vitro (14). The latter study relied on a truncated version of the p300 protein (from amino acid 965 to amino acid 1810) that is often employed in this type of study. It is of note that the p300 965-1810 fragment has lost the main protein-protein interaction domains of p300. In particular, the regions of p300 previously shown to interact with MyoD, the CH3 domain (amino acids 1620 -1891) (15) and the N-terminal KIX domain (amino acids 379 -654) (16), are truncated or altogether deleted in p300 . Thus a possible explanation for the discrepancy between these two series of experiments might be that a physical contact between the HAT and its substrate is required for acetylation and that the interaction domains are critical for the reaction to take place. Here, we present the results of a direct test of ...