A design method for integrated modeling and assessment DSS in Hydroinformatics based on ontology and domain modeling is given. Four levels of design are discussed. First, formal concept analysis is employed for domain ontology analysis and construction in Hydroinformatics. Second, OWL is used as representation language for domain ontology. In third level, metamodel method of domain model is combined with domain ontology for the design of domain model. And finally an example of flood risk analysis and management is given to illustrate the design process and integrated method.